DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and 2610008E11Rik

DIOPT Version :10

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001004362.2 Gene:2610008E11Rik / 72128 MGIID:1919378 Length:669 Species:Mus musculus


Alignment Length:409 Identity:122/409 - (29%)
Similarity:189/409 - (46%) Gaps:64/409 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 HKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANE 382
            |:::.||..:.::|..|.|.|..||.|.:|...|:..:||.|:||.|.|..:|.|..|.:.|.::
Mouse   319 HQSRTHSREKPYECTECTKTFYCKSDLTRHQTTHSGEKPFECNECSKTFYYKSDLANHQKTHTDD 383

  Fly   383 KPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHV-RTHQDVSPHLIFKN 446
            .|:.|..|.::|..::.||||.|||:||||:.|.||.|.|..|:.|.:|. |||....|:     
Mouse   384 NPYECKECRKTFCSKSSLNQHHRIHTGEKPYECNECKKSFNSKSNLTEHQRRTHTREKPY----- 443

  Fly   447 GPHPTLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFKDGKGQKILPEVL 511
                           |.|:.                           :.|::       ...|:.
Mouse   444 ---------------ECNEC---------------------------WKSFY-------CRSELT 459

  Fly   512 QHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHT 576
            .|  .|...:..|..|..|.|.|..|:.|.||...|...:||.|.:|.|.|..:|:|.||.|.||
Mouse   460 NH--QRTHTVERYYECKECRKNFYCKSNLNQHQRTHTGEKPYECKDCNKAFYCKSNLNQHQRTHT 522

  Fly   577 NEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRPFCCPM 641
            .||||.|..|.:.|..::.|.:|.:||:|||||:|.:|.|.|.||:.|.:|.|||.|::|:.|  
Mouse   523 GEKPFACKDCSKAFYCKSSLVKHQKIHSGEKPYECEECRKTFFQKSDLTRHQRTHTGEKPYEC-- 585

  Fly   642 PNCRRRFATENEVTKH--IDNHMNPNTTKVRRQQQQQHQQQQQQQQQQQQQQQQQNNNAVAQ--- 701
            .:|.:.|..::.:.:|  ...|..|...|..|:......:..:.|:....::.....|...|   
Mouse   586 KDCSKTFYCKSNLNQHQRTHTHEKPYECKECRETFYSKSELTEHQRTHTDEKPYVMFNIDCQLDK 650

  Fly   702 VANHLMNDAKSLAAQQFLN 720
            :.:||.:....:..:.:|:
Mouse   651 IWDHLGDRPVGMPVKDYLD 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 8/19 (42%)
COG5048 355..666 CDD:227381 102/313 (33%)
C2H2 Zn finger 359..379 CDD:275368 8/19 (42%)
C2H2 Zn finger 387..407 CDD:275368 8/19 (42%)
C2H2 Zn finger 415..435 CDD:275368 9/20 (45%)
C2H2 Zn finger 527..547 CDD:275368 8/19 (42%)
C2H2 Zn finger 555..575 CDD:275368 9/19 (47%)
C2H2 Zn finger 583..603 CDD:275368 5/19 (26%)
C2H2 Zn finger 611..631 CDD:275368 9/19 (47%)
C2H2 Zn finger 639..661 CDD:275368 4/23 (17%)
2610008E11RikNP_001004362.2 KRAB 10..69 CDD:214630
C2H2 Zn finger 218..237 CDD:275368
C2H2 Zn finger 245..266 CDD:275368
C2H2 Zn finger 274..295 CDD:275368
COG5048 299..644 CDD:227381 117/382 (31%)
C2H2 Zn finger 303..324 CDD:275368 1/4 (25%)
C2H2 Zn finger 332..352 CDD:275368 8/19 (42%)
C2H2 Zn finger 360..380 CDD:275368 8/19 (42%)
C2H2 Zn finger 388..408 CDD:275368 8/19 (42%)
C2H2 Zn finger 416..437 CDD:275368 9/20 (45%)
C2H2 Zn finger 445..465 CDD:275368 5/55 (9%)
C2H2 Zn finger 473..493 CDD:275368 8/19 (42%)
C2H2 Zn finger 501..521 CDD:275368 9/19 (47%)
C2H2 Zn finger 529..549 CDD:275368 5/19 (26%)
C2H2 Zn finger 557..577 CDD:275368 9/19 (47%)
C2H2 Zn finger 585..605 CDD:275368 4/21 (19%)
C2H2 Zn finger 613..633 CDD:275368 3/19 (16%)
Blue background indicates that the domain is not in the aligned region.

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