DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and trem

DIOPT Version :10

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster


Alignment Length:431 Identity:98/431 - (22%)
Similarity:152/431 - (35%) Gaps:110/431 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 QQAQQHLTAQQQQQQQQQNAA-----QAAAQAAAVAAA-------AGQPQSPPGG----GQE--- 113
            |::.||:.....::....|||     .:.|:..:|.:.       |.|..   ||    |:|   
  Fly    79 QRSHQHIMDMLDREASNANAAGEGDLLSIAEDLSVESVLKSWEDYASQLD---GGMKVEGEEDQQ 140

  Fly   114 -------ARDNGSGDGRQQQVSPSSSPYPSVQQQQRANGAGDEDPMNHQLANQQNPAPNQNQSSN 171
                   ..|..:.|.....|...:.|.|:..::.......:|..:   |.|:.:|...|.:.| 
  Fly   141 HQVITYVVEDGDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYEL---LTNENSPEIAQEKGS- 201

  Fly   172 DPQHSGSNAGESGNPHVQQNGGPQNDPGNSFRTPDY-YDPRHAAPQGGMLAPPGFPPLHYLNKGV 235
                :|::        |.....|:.:........|. |||.||.|:                   
  Fly   202 ----TGTD--------VATEEPPEEEIAEDILDSDEDYDPTHAKPE------------------- 235

  Fly   236 LPMEQSGGGGGAGGGEAYALPEMLPAQQNGQQNAG--PANTNANEGGAGANGSGGVGGATGASVG 298
             ..::|       |.:..|..:..|..:..::..|  |.|..                :|.....
  Fly   236 -KCDRS-------GRKPVAYHKNSPKVETFKKKVGRKPRNKL----------------STYICDV 276

  Fly   299 VGSVGVTSGGRTGNGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECG 363
            .|::..|....|       ...|.||.::..:|..||:.|.|...|::|...||..||:.|:.|.
  Fly   277 CGNIYPTQARLT-------EHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCP 334

  Fly   364 KRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAIL 428
            ..|..:|..|:|.|||..|:|:.|..|||:|.....|..|..||:||||..|..|||.|.:...|
  Fly   335 AAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKL 399

  Fly   429 NQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGEDNDTKGD 469
            ..|..||.            ....|.:|.....:..|.||:
  Fly   400 RLHRETHN------------RRITWRNDAEESTKAEDVKGE 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 7/19 (37%)
COG5048 355..666 CDD:227381 40/115 (35%)
C2H2 Zn finger 359..379 CDD:275368 7/19 (37%)
C2H2 Zn finger 387..407 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 527..547 CDD:275368
C2H2 Zn finger 555..575 CDD:275368
C2H2 Zn finger 583..603 CDD:275368
C2H2 Zn finger 611..631 CDD:275368
C2H2 Zn finger 639..661 CDD:275368
tremNP_650861.1 zf-AD 11..87 CDD:214871 3/7 (43%)
COG5048 <264..411 CDD:227381 53/181 (29%)
C2H2 Zn finger 274..294 CDD:275368 4/26 (15%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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