DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and CG4424

DIOPT Version :9

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_650859.3 Gene:CG4424 / 42390 FlyBaseID:FBgn0038765 Length:345 Species:Drosophila melanogaster


Alignment Length:369 Identity:99/369 - (26%)
Similarity:137/369 - (37%) Gaps:81/369 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 CLTCGKDFKQKSTLLQHDRIH--------TDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTC 387
            |.||          ||....|        .|..|...|.|.|   .:|.....:|..|.|:....
  Fly    11 CRTC----------LQDGEAHMVSIFQTADDRLPGGVSLCDK---IESLSGIQIRATAKEEVLPT 62

  Fly   388 PYCSR---------SFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLI 443
            ..|.|         .|||                 .|....:..|:..|.:   ...|.|...::
  Fly    63 RICLRCKAFLTLAHKFRQ-----------------ICQRSNEFLREYVIKD---AVEQGVVKEVV 107

  Fly   444 FKNGPHPTLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDS-QGTPDGSGGMHYPSYFKDGKGQKIL 507
            .:..|     .:..|...|..:...|.....|.:..||. :.||.|......|:.        :.
  Fly   108 QQTRP-----STPPPIETEQLEPPEDEVLEEGVWSTEDPIEETPHGPAEKERPTV--------LT 159

  Fly   508 PEVLQHIGVRPANMP-----------LYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKR 561
            .|:|......||:.|           |:| |.||...:.:|:||..|...|.:.|||.|..|.|.
  Fly   160 VEMLPAPYPPPASTPPPAPAGAVKGKLHV-CAICGNGYPRKSTLDTHMRRHNDERPYECEICHKS 223

  Fly   562 FRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQ 626
            |.....|.:|:|.||..||:.|.||.|.|..||.|.:|.|.|..|:||.|..|||.|...::|..
  Fly   224 FHVNYQLKRHIRQHTGAKPYTCQYCQRNFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKM 288

  Fly   627 HTRTHQGDRPFCCPMPNCRRRFATENEVTKHI--DNHMN-PNTT 667
            |.:||.|::|..|.:  |.:.||..:.:..|:  ..|:| |..|
  Fly   289 HYKTHTGEKPHICQL--CNKSFARIHNLVAHLQTQQHINDPRLT 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 5/19 (26%)
COG5048 355..666 CDD:227381 91/334 (27%)
zf-C2H2 357..379 CDD:278523 5/21 (24%)
C2H2 Zn finger 359..379 CDD:275368 5/19 (26%)
zf-H2C2_2 371..396 CDD:290200 6/33 (18%)
C2H2 Zn finger 387..407 CDD:275368 5/28 (18%)
zf-H2C2_2 400..424 CDD:290200 1/23 (4%)
C2H2 Zn finger 415..435 CDD:275368 3/19 (16%)
C2H2 Zn finger 527..547 CDD:275368 7/19 (37%)
zf-C2H2 553..575 CDD:278523 8/21 (38%)
C2H2 Zn finger 555..575 CDD:275368 7/19 (37%)
C2H2 Zn finger 583..603 CDD:275368 10/19 (53%)
zf-H2C2_2 596..620 CDD:290200 12/23 (52%)
C2H2 Zn finger 611..631 CDD:275368 7/19 (37%)
zf-H2C2_2 624..650 CDD:290200 9/25 (36%)
C2H2 Zn finger 639..661 CDD:275368 5/23 (22%)
CG4424NP_650859.3 zf-AD 10..92 CDD:285071 22/110 (20%)
C2H2 Zn finger 189..209 CDD:275368 7/19 (37%)
DUF45 <204..281 CDD:302795 34/76 (45%)
COG5048 210..>345 CDD:227381 48/123 (39%)
C2H2 Zn finger 217..237 CDD:275368 7/19 (37%)
C2H2 Zn finger 245..265 CDD:275368 10/19 (53%)
zf-H2C2_2 257..282 CDD:290200 12/24 (50%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
zf-H2C2_2 286..310 CDD:290200 9/25 (36%)
C2H2 Zn finger 301..320 CDD:275368 5/20 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45471448
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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