DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and CG6808

DIOPT Version :9

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001247055.1 Gene:CG6808 / 41394 FlyBaseID:FBgn0037921 Length:375 Species:Drosophila melanogaster


Alignment Length:387 Identity:92/387 - (23%)
Similarity:136/387 - (35%) Gaps:99/387 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 CLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFR 395
            |.||.|...| |||  .....::|.....|..|...:....|...:          |..|...  
  Fly    10 CRTCRKKGTQ-STL--QSLFESNAHKLLISYAGTSVKPDDGLPDQI----------CTVCLMQ-- 59

  Fly   396 QRAILNQHIRIHSGEKPFACPECGKHFR-----------------QKAILNQHVRTH-QDVSPHL 442
                |.:..|..|     ||.:...|.|                 .|..|.|..|.. |::|..|
  Fly    60 ----LEEVDRFLS-----ACKQSDAHLRSLVRQTLSSASAFETLEDKDQLEQKKRARKQNISGRL 115

  Fly   443 IFKNGPHPTLWPSDVPFPGEDN---DTKGD------------------IAGTGGGYHDED----- 481
            |.:|         .:.|..::|   .||.|                  .|......|.||     
  Fly   116 IEEN---------PINFKTQENALETTKDDEILPINKFSSDFVFDLNVNAENEKDIHQEDYTISD 171

  Fly   482 ----------------SQGTPDGSGGMHYPSYFKDGKGQKILPEVLQHIGVRPANMPLYVRCPIC 530
                            ||.:...:..:...|  :|....:...:.:..:||  |..|...||.||
  Fly   172 MDLDREISDQNYSETYSQESSAATDSIQETS--EDYHNLEPSADYVIDLGV--ACEPDKYRCKIC 232

  Fly   531 DKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTI 595
            ...::..:.|..|..:|.:.:.:.|..|.|.||...:|..|:|.||.|||:.|.||.|.|...:.
  Fly   233 SNTYRCLSQLNAHSQVHRKEKDHQCEVCQKTFRAACNLKTHMRTHTGEKPYQCCYCSRRFADNST 297

  Fly   596 LNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATENEVTKH 657
            ..:|.|:||.|:||.|..|||.|...:..:.|...|..::...|.|  |::.|..::::|.|
  Fly   298 HRKHERLHTNERPYACNICGKTFSLSSSRNAHYYLHSSEKSHKCLM--CKKEFRLKHQLTAH 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 8/19 (42%)
COG5048 355..666 CDD:227381 83/363 (23%)
zf-C2H2 357..379 CDD:278523 3/21 (14%)
C2H2 Zn finger 359..379 CDD:275368 3/19 (16%)
zf-H2C2_2 371..396 CDD:290200 3/24 (13%)
C2H2 Zn finger 387..407 CDD:275368 4/19 (21%)
zf-H2C2_2 400..424 CDD:290200 7/40 (18%)
C2H2 Zn finger 415..435 CDD:275368 7/36 (19%)
C2H2 Zn finger 527..547 CDD:275368 5/19 (26%)
zf-C2H2 553..575 CDD:278523 8/21 (38%)
C2H2 Zn finger 555..575 CDD:275368 8/19 (42%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
zf-H2C2_2 596..620 CDD:290200 12/23 (52%)
C2H2 Zn finger 611..631 CDD:275368 6/19 (32%)
zf-H2C2_2 624..650 CDD:290200 6/25 (24%)
C2H2 Zn finger 639..661 CDD:275368 6/19 (32%)
CG6808NP_001247055.1 zf-AD 9..79 CDD:214871 20/92 (22%)
C2H2 Zn finger 229..249 CDD:275368 5/19 (26%)
zf-C2H2 255..277 CDD:278523 8/21 (38%)
C2H2 Zn finger 257..277 CDD:275368 8/19 (42%)
zf-H2C2_2 269..293 CDD:290200 12/23 (52%)
C2H2 Zn finger 285..305 CDD:275368 7/19 (37%)
zf-H2C2_2 299..321 CDD:290200 11/21 (52%)
C2H2 Zn finger 313..333 CDD:275368 6/19 (32%)
C2H2 Zn finger 341..359 CDD:275368 6/19 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45471450
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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