DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and Meics

DIOPT Version :9

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster


Alignment Length:433 Identity:122/433 - (28%)
Similarity:166/433 - (38%) Gaps:117/433 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 QQNGQQNAGPANTNANEGGAGAN---------GSGG---VGGATGASVGVGSVGVTSGGRTGNGP 314
            ::|...|......::::...|:.         |.||   ||| ...|:.....||:..  |....
  Fly   194 EENDNNNTDSEREDSDQWTVGSTEDQDEPWIPGGGGRQTVGG-NNQSLLCTECGVSYS--TQKAL 255

  Fly   315 GR---PHK-----NKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSH 371
            .|   .||     .|||      .|..||:.|:..:.|..|.|.||..|||.|..|.|.:.....
  Fly   256 ARHVAKHKEQGDTQKPH------LCDFCGRGFRTNAQLTTHRRRHTGERPFKCPLCPKAYTHGPT 314

  Fly   372 LTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQ 436
            |..|:..|..||...||.|.::|..|..|..||:.|:||:|:.||:|.:.|.:.:.|..|.|.|:
  Fly   315 LKSHMHTHDEEKGHKCPQCDKTFYTRGNLRAHIQRHTGERPYKCPDCPQTFAKNSGLKLHSRLHK 379

  Fly   437 DVSPHLIFKNGPHPTLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFKDG 501
            :..|                                                         ||  
  Fly   380 EERP---------------------------------------------------------FK-- 385

  Fly   502 KGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQS 566
                                     |.:|.|.|.|...|:.|..:|...|.:.||:|.|.|.::|
  Fly   386 -------------------------CELCGKGFVQNQHLITHLRVHNGDRQFKCPDCDKSFFEKS 425

  Fly   567 HLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTH 631
            ::.:|.|.|:..|||.|..|.:.|.....|..|||||||||||||.||||.|.....|.:||..|
  Fly   426 NMMKHQRTHSGIKPFKCEECGQAFSHNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMKHTLWH 490

  Fly   632 --QGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNTTKVRRQ 672
              ..||||.|  ..|.:.:.|:..:..|...|.||:..|...|
  Fly   491 VDNNDRPFKC--SQCPKAYDTQQSLRGHEKTHKNPDEPKTLHQ 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 7/19 (37%)
COG5048 355..666 CDD:227381 92/312 (29%)
zf-C2H2 357..379 CDD:278523 6/21 (29%)
C2H2 Zn finger 359..379 CDD:275368 5/19 (26%)
zf-H2C2_2 371..396 CDD:290200 9/24 (38%)
C2H2 Zn finger 387..407 CDD:275368 8/19 (42%)
zf-H2C2_2 400..424 CDD:290200 11/23 (48%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 527..547 CDD:275368 7/19 (37%)
zf-C2H2 553..575 CDD:278523 8/21 (38%)
C2H2 Zn finger 555..575 CDD:275368 8/19 (42%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
zf-H2C2_2 596..620 CDD:290200 19/23 (83%)
C2H2 Zn finger 611..631 CDD:275368 9/19 (47%)
zf-H2C2_2 624..650 CDD:290200 10/27 (37%)
C2H2 Zn finger 639..661 CDD:275368 4/21 (19%)
MeicsNP_524062.1 zf-AD 21..95 CDD:285071
C2H2 Zn finger 242..262 CDD:275368 4/21 (19%)
C2H2 Zn finger 274..294 CDD:275368 7/19 (37%)
zf-H2C2_2 287..311 CDD:290200 11/23 (48%)
C2H2 Zn finger 302..322 CDD:275368 5/19 (26%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
zf-H2C2_2 342..366 CDD:290200 10/23 (43%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
COG5048 <395..583 CDD:227381 56/139 (40%)
zf-C2H2 412..434 CDD:278523 8/21 (38%)
C2H2 Zn finger 414..434 CDD:275368 8/19 (42%)
zf-H2C2_2 426..451 CDD:290200 9/24 (38%)
C2H2 Zn finger 442..462 CDD:275368 7/19 (37%)
zf-H2C2_2 454..478 CDD:290200 18/23 (78%)
C2H2 Zn finger 470..486 CDD:275368 7/15 (47%)
C2H2 Zn finger 500..520 CDD:275368 4/21 (19%)
C2H2 Zn finger 532..552 CDD:275370 122/433 (28%)
C2H2 Zn finger 559..579 CDD:275370
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440477
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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