DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and Zfp26

DIOPT Version :10

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001102465.2 Gene:Zfp26 / 367033 RGDID:1565847 Length:956 Species:Rattus norvegicus


Alignment Length:373 Identity:125/373 - (33%)
Similarity:172/373 - (46%) Gaps:70/373 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 HSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTC 387
            |:..:.:.|..|||.|.::|:|:.|.|.||..:.:.|.||||.|.|.|.||:|:|.|..|||:.|
  Rat   363 HTVEKPYDCKECGKAFTERSSLIVHLRQHTREKSYECKECGKTFIQPSRLTEHMRSHTGEKPYQC 427

  Fly   388 PYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSP------------ 440
            ..|..:|...:.|..|:|.|:|||||.|..|||.|.:.:.|..|:|||....|            
  Rat   428 DQCGNAFASSSYLTTHLRTHTGEKPFECNICGKAFTRSSYLLGHIRTHTGEKPYECKVCGKAFSG 492

  Fly   441 ------HLIFKNGPHPTLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFK 499
                  ||....|..|  :|.          |:.:.|.|......|                :.|
  Rat   493 RSWLTIHLRKHTGERP--YPC----------TECEKAFTSFAQLTE----------------HIK 529

  Fly   500 DGKGQK----------------ILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHI 548
            ...|:|                :......|.|::|      .:|..|.|:|..::.|.:|..||.
  Rat   530 THTGEKPFRCKVCARTFRNSSCLKTHFRIHTGIKP------YKCNYCGKDFTARSGLTKHVLIHN 588

  Fly   549 ESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQ 613
            ..:||.|.||||.|...|.|.:|:||||.||||.|..|.:.....:.|..|||.||||||::|.|
  Rat   589 GEKPYECKECGKAFSTSSGLVEHIRIHTGEKPFECYQCGKALAHSSSLVGHLRTHTGEKPFECNQ 653

  Fly   614 CGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATENEVTKHIDNH 661
            |.|.|.:.:.|..|.|||.|::|:.|  ..|.:.|...:.:||||..|
  Rat   654 CDKTFTRSSYLRIHMRTHTGEKPYEC--KECGKTFPERSCLTKHIRTH 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 9/19 (47%)
COG5048 355..666 CDD:227381 113/341 (33%)
C2H2 Zn finger 359..379 CDD:275368 12/19 (63%)
C2H2 Zn finger 387..407 CDD:275368 6/19 (32%)
C2H2 Zn finger 415..435 CDD:275368 8/19 (42%)
C2H2 Zn finger 527..547 CDD:275368 6/19 (32%)
C2H2 Zn finger 555..575 CDD:275368 10/19 (53%)
C2H2 Zn finger 583..603 CDD:275368 6/19 (32%)
C2H2 Zn finger 611..631 CDD:275368 8/19 (42%)
C2H2 Zn finger 639..661 CDD:275368 7/21 (33%)
Zfp26NP_001102465.2 KRAB 104..162 CDD:214630
C2H2 Zn finger 288..308 CDD:275368
COG5048 338..751 CDD:227381 125/373 (34%)
C2H2 Zn finger 343..363 CDD:275368 125/373 (34%)
C2H2 Zn finger 371..391 CDD:275368 9/19 (47%)
C2H2 Zn finger 399..419 CDD:275368 12/19 (63%)
C2H2 Zn finger 427..447 CDD:275368 6/19 (32%)
C2H2 Zn finger 455..475 CDD:275368 8/19 (42%)
C2H2 Zn finger 483..503 CDD:275368 2/19 (11%)
C2H2 Zn finger 511..531 CDD:275368 5/45 (11%)
C2H2 Zn finger 539..559 CDD:275368 0/19 (0%)
C2H2 Zn finger 567..587 CDD:275368 6/19 (32%)
COG5048 591..>918 CDD:227381 51/111 (46%)
C2H2 Zn finger 595..615 CDD:275368 10/19 (53%)
C2H2 Zn finger 623..643 CDD:275368 6/19 (32%)
C2H2 Zn finger 651..671 CDD:275368 8/19 (42%)
C2H2 Zn finger 679..699 CDD:275368 7/21 (33%)
C2H2 Zn finger 707..727 CDD:275368
C2H2 Zn finger 735..755 CDD:275368
C2H2 Zn finger 763..783 CDD:275368
C2H2 Zn finger 791..811 CDD:275368
C2H2 Zn finger 819..839 CDD:275368
C2H2 Zn finger 847..867 CDD:275368
C2H2 Zn finger 875..895 CDD:275368
C2H2 Zn finger 903..923 CDD:275368
C2H2 Zn finger 931..947 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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