DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jim and CG18011

DIOPT Version :9

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_610559.1 Gene:CG18011 / 36068 FlyBaseID:FBgn0033491 Length:985 Species:Drosophila melanogaster


Alignment Length:501 Identity:107/501 - (21%)
Similarity:178/501 - (35%) Gaps:119/501 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 HKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTD--ARPFPCSECGKRFRQQSHLTQHLR-IH 379
            |.|..|..:....|..|.:.|:..|..::|::.|.:  :..:.||||...|..:..|..|:| :|
  Fly   475 HLNYSHEPVGTLFCDLCDRTFRDPSVFMEHNKSHANVSSTTYSCSECMANFESRGRLNGHMRAMH 539

  Fly   380 ANEKPFTCPYCSRSFRQRAILNQHIRIH----------------------------------SGE 410
            .:  ..:|..|||.|...|..|.|::.|                                  .|.
  Fly   540 GS--VISCELCSREFATEATYNIHMKKHLIIEKDVHVCSTCGLLSDSRETLLAHVNSVKTACFGS 602

  Fly   411 K--------PFACPECGKHFRQKAILNQHVRTHQDVSPHL--IF------KNGPHPTLW------ 453
            |        .:.|..|..:|::|..|    :.|:|...|.  :|      |..||..|:      
  Fly   603 KIDVELLRDAYVCEYCSSYFKEKDCL----QAHRDSGVHKDGVFLCQPCGKEFPHMKLYRHHLRN 663

  Fly   454 ----PSD---------VPFPGEDNDTKGDIAGTGGGY------HDEDS-QGTPDGSGGMHYPSYF 498
                .||         |.:..:..:...........|      |:..| |..........:...|
  Fly   664 YQQLRSDSTHRRLEICVYYMCDQENCTESYVNWNSLYTHKRRTHESASKQAEKSSKSAQEWVCQF 728

  Fly   499 --KDGKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKR 561
              |:.:.:..|     .:.|..::....|.||:|:..:|....|.:|.....|  |..||||.|.
  Fly   729 CLKECRSKMSL-----SVHVARSHNNDNVTCPLCNSSYKSHDALAKHHAYWHE--PIECPECFKI 786

  Fly   562 FRQQSHLTQHLR-IHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILD 625
            .:.:.:...|:. :|:|:|.:.|..|.:.|..::.:..|.::| |:. |.|.||....|.|..|.
  Fly   787 VKNRRNYDTHVNVVHSNKKRYSCSVCQKGFYHKSEMEAHQKLH-GQS-YSCEQCSFTTRNKKSLS 849

  Fly   626 QHT-RTHQGDRPFCCPMPNCRRRFATENEVTKHIDN-HMNPNT-----------TKVRRQQQQQH 677
            .|. ..|.....|.|.:  |::||.....:..|:.. |.:..|           |.|...|...|
  Fly   850 VHVLGQHYKRFAFECNV--CKKRFGRSQGLKTHMQRAHGDKYTCRDYFDGGCGRTFVNSSQLNVH 912

  Fly   678 QQQQQQQQQQQQQQQQQNNNAVAQVANHLMNDAKSLAAQQFLNNNN 723
            .::........|:.       |.:...::.:||.|.:.::.||.||
  Fly   913 VRKIHDGIILLQED-------VVEEDEYITDDAPSTSKKRRLNENN 951

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 5/19 (26%)
COG5048 355..666 CDD:227381 84/392 (21%)
zf-C2H2 357..379 CDD:278523 8/22 (36%)
C2H2 Zn finger 359..379 CDD:275368 8/20 (40%)
zf-H2C2_2 371..396 CDD:290200 9/25 (36%)
C2H2 Zn finger 387..407 CDD:275368 8/19 (42%)
zf-H2C2_2 400..424 CDD:290200 8/65 (12%)
C2H2 Zn finger 415..435 CDD:275368 5/19 (26%)
C2H2 Zn finger 527..547 CDD:275368 6/19 (32%)
zf-C2H2 553..575 CDD:278523 6/22 (27%)
C2H2 Zn finger 555..575 CDD:275368 6/20 (30%)
C2H2 Zn finger 583..603 CDD:275368 4/19 (21%)
zf-H2C2_2 596..620 CDD:290200 7/23 (30%)
C2H2 Zn finger 611..631 CDD:275368 7/20 (35%)
zf-H2C2_2 624..650 CDD:290200 8/26 (31%)
C2H2 Zn finger 639..661 CDD:275368 5/22 (23%)
CG18011NP_610559.1 PRK14950 <98..>184 CDD:237864
C2H2 Zn finger 488..508 CDD:275368 5/19 (26%)
C2H2 Zn finger 518..538 CDD:275368 8/19 (42%)
C2H2 Zn finger 545..565 CDD:275368 8/19 (42%)
C2H2 Zn finger 575..596 CDD:275371 0/20 (0%)
SFP1 <682..747 CDD:227516 8/69 (12%)
C2H2 Zn finger 754..775 CDD:275368 6/20 (30%)
C2H2 Zn finger 780..801 CDD:275368 6/20 (30%)
C2H2 Zn finger 809..829 CDD:275368 4/19 (21%)
C2H2 Zn finger 864..885 CDD:275368 5/22 (23%)
C2H2 Zn finger 891..917 CDD:275368 4/25 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5195
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.950

Return to query results.
Submit another query.