DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and ZNF546

DIOPT Version :9

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_848639.2 Gene:ZNF546 / 339327 HGNCID:28671 Length:836 Species:Homo sapiens


Alignment Length:361 Identity:128/361 - (35%)
Similarity:179/361 - (49%) Gaps:46/361 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 HSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTC 387
            |:..|.::|..|||.|:.:..:.||.:|||..:|:.|:||||.|...|:|.||.:||..|||:.|
Human   351 HTGERPYECKVCGKTFRVQRHISQHQKIHTGVKPYKCNECGKAFSHGSYLVQHQKIHTGEKPYEC 415

  Fly   388 PYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGP---- 448
            ..|.:||...|.|.:|.|||:||||:.|.||||.||.:..|.:|.|||....|:...:.|.    
Human   416 KECGKSFSFHAELARHRRIHTGEKPYECRECGKAFRLQTELTRHHRTHTGEKPYECKECGKAFIC 480

  Fly   449 ------HPTLWPSDVPFP----GEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFKD--- 500
                  |......::|:.    |:...::         ||..           .||..:..:   
Human   481 GYQLTLHLRTHTGEIPYECKECGKTFSSR---------YHLT-----------QHYRIHTGEKPY 525

  Fly   501 -----GKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGK 560
                 ||..::..|:.:|..:.....|  ..|..|.|.|......:.|..||.....|.|.||||
Human   526 ICNECGKAFRLQGELTRHHRIHTCEKP--YECKECGKAFIHSNQFISHQRIHTSESTYICKECGK 588

  Fly   561 RFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILD 625
            .|.::.:||||.:|||.|||:.|..|.:.||.:|.|.||.|||||||||||.:|||.|.:...|.
Human   589 IFSRRYNLTQHFKIHTGEKPYICNECGKAFRFQTELTQHHRIHTGEKPYKCTECGKAFIRSTHLT 653

  Fly   626 QHTRTHQGDRPFCCPMPNCRRRFATENEVTKHIDNH 661
            ||.|.|.|::|:.|  ..|.:.|:....:|:|...|
Human   654 QHHRIHTGEKPYEC--TECGKTFSRHYHLTQHHRGH 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 7/19 (37%)
COG5048 355..666 CDD:227381 116/329 (35%)
zf-C2H2 357..379 CDD:278523 10/21 (48%)
C2H2 Zn finger 359..379 CDD:275368 10/19 (53%)
zf-H2C2_2 371..396 CDD:290200 12/24 (50%)
C2H2 Zn finger 387..407 CDD:275368 8/19 (42%)
zf-H2C2_2 400..424 CDD:290200 15/23 (65%)
C2H2 Zn finger 415..435 CDD:275368 10/19 (53%)
C2H2 Zn finger 527..547 CDD:275368 5/19 (26%)
zf-C2H2 553..575 CDD:278523 11/21 (52%)
C2H2 Zn finger 555..575 CDD:275368 10/19 (53%)
C2H2 Zn finger 583..603 CDD:275368 9/19 (47%)
zf-H2C2_2 596..620 CDD:290200 18/23 (78%)
C2H2 Zn finger 611..631 CDD:275368 9/19 (47%)
zf-H2C2_2 624..650 CDD:290200 10/25 (40%)
C2H2 Zn finger 639..661 CDD:275368 5/21 (24%)
ZNF546NP_848639.2 KRAB 60..120 CDD:214630
KRAB 60..99 CDD:279668
COG5048 <215..375 CDD:227381 7/23 (30%)
C2H2 Zn finger 219..239 CDD:275368
zf-H2C2_2 231..254 CDD:290200
C2H2 Zn finger 247..267 CDD:275368
C2H2 Zn finger 275..295 CDD:275368
zf-H2C2_2 287..312 CDD:290200
C2H2 Zn finger 303..323 CDD:275368
C2H2 Zn finger 331..351 CDD:275368 128/361 (35%)
zf-H2C2_2 344..366 CDD:290200 6/14 (43%)
C2H2 Zn finger 359..379 CDD:275368 7/19 (37%)
zf-H2C2_2 371..396 CDD:290200 12/24 (50%)
COG5048 383..823 CDD:227381 116/329 (35%)
C2H2 Zn finger 387..407 CDD:275368 10/19 (53%)
zf-H2C2_2 399..423 CDD:290200 11/23 (48%)
C2H2 Zn finger 415..435 CDD:275368 8/19 (42%)
zf-H2C2_2 427..450 CDD:290200 14/22 (64%)
C2H2 Zn finger 443..463 CDD:275368 10/19 (53%)
zf-H2C2_2 455..478 CDD:290200 7/22 (32%)
C2H2 Zn finger 471..491 CDD:275368 2/19 (11%)
C2H2 Zn finger 499..519 CDD:275368 5/39 (13%)
C2H2 Zn finger 527..547 CDD:275368 4/19 (21%)
zf-H2C2_2 539..562 CDD:290200 6/24 (25%)
C2H2 Zn finger 555..575 CDD:275368 5/19 (26%)
C2H2 Zn finger 583..603 CDD:275368 10/19 (53%)
C2H2 Zn finger 611..631 CDD:275368 9/19 (47%)
zf-H2C2_2 623..648 CDD:290200 18/24 (75%)
C2H2 Zn finger 639..659 CDD:275368 9/19 (47%)
zf-H2C2_2 651..676 CDD:290200 10/26 (38%)
C2H2 Zn finger 667..687 CDD:275368 5/21 (24%)
C2H2 Zn finger 695..715 CDD:275368
C2H2 Zn finger 723..743 CDD:275368
C2H2 Zn finger 751..771 CDD:275368
zf-H2C2_2 763..787 CDD:290200
C2H2 Zn finger 779..799 CDD:275368
zf-H2C2_2 791..816 CDD:290200
C2H2 Zn finger 807..827 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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