DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and dwg

DIOPT Version :10

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_477338.3 Gene:dwg / 31265 FlyBaseID:FBgn0000520 Length:592 Species:Drosophila melanogaster


Alignment Length:308 Identity:82/308 - (26%)
Similarity:118/308 - (38%) Gaps:84/308 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   329 FKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRS 393
            :.|..|.|.|:|:..|.||.|.|.|.:.:.|.|||||.:...:..:|:..|.|.||..|..|.|.
  Fly   305 YVCTVCQKAFRQQCRLNQHMRSHVDEKQYECEECGKRLKHLRNYKEHMLTHTNVKPHQCSICGRF 369

  Fly   394 FRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVP 458
            :|..:.|..|.|.|:.:||:.|.:||:.:    ....|:|.|:                      
  Fly   370 YRTTSSLAVHKRTHAEKKPYNCDQCGRGY----AAFDHLRRHK---------------------- 408

  Fly   459 FPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFKDGKGQKILPEVLQHIGVRPANMPL 523
                                                                |.|.|.||     
  Fly   409 ----------------------------------------------------LTHTGERP----- 416

  Fly   524 YVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPR 588
             ..|.:|||.:...::|.||...|...:.:.|..||....|:|...:|:.:|:..|...|..|..
  Fly   417 -YACDLCDKAYYDSSSLRQHKISHTGKKAFTCEICGVGLSQKSGYKKHMMVHSGVKAHKCDVCGH 480

  Fly   589 FFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRP 636
            .|...:.||.|:|:|:||||:||..|.|.|..|..|..|.|.|..:.|
  Fly   481 AFTFTSNLNAHVRLHSGEKPFKCEVCVKAFPTKKRLASHMRVHNKESP 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 9/19 (47%)
COG5048 355..666 CDD:227381 71/282 (25%)
C2H2 Zn finger 359..379 CDD:275368 7/19 (37%)
C2H2 Zn finger 387..407 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..435 CDD:275368 5/19 (26%)
C2H2 Zn finger 527..547 CDD:275368 7/19 (37%)
C2H2 Zn finger 555..575 CDD:275368 6/19 (32%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
C2H2 Zn finger 611..631 CDD:275368 8/19 (42%)
C2H2 Zn finger 639..661 CDD:275368
dwgNP_477338.3 zf-AD 14..91 CDD:214871
COG5048 <297..451 CDD:227381 52/229 (23%)
C2H2 Zn finger 307..327 CDD:275368 9/19 (47%)
C2H2 Zn finger 335..355 CDD:275368 7/19 (37%)
C2H2 Zn finger 363..383 CDD:275368 7/19 (37%)
COG5048 <387..523 CDD:227381 50/219 (23%)
C2H2 Zn finger 391..411 CDD:275368 7/97 (7%)
C2H2 Zn finger 419..439 CDD:275368 7/19 (37%)
C2H2 Zn finger 447..467 CDD:275368 6/19 (32%)
C2H2 Zn finger 475..495 CDD:275368 7/19 (37%)
C2H2 Zn finger 503..523 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

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