DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and Zfp646

DIOPT Version :9

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:XP_008758161.1 Gene:Zfp646 / 309003 RGDID:1561579 Length:1786 Species:Rattus norvegicus


Alignment Length:885 Identity:182/885 - (20%)
Similarity:258/885 - (29%) Gaps:335/885 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 GAIGATPAQWGSEMYPNIQQQAQQHLTAQQQQQQQQQNAAQAAAQ------AAAVAAAAGQPQSP 107
            |..|.|....||....:..|.:...........:...:|.:..|.      ..:|....|..:|.
  Rat   945 GCCGQTYDDLGSLERHHRSQSSSNRAETVPSHLEGSGDATEMVADHGFEGTVTSVLEEGGDIKSE 1009

  Fly   108 PGGGQEARDNGSGDGRQQQVSPSSSPYPSVQ--QQQRANGAGDEDPMNHQLANQ----------- 159
            .|.|....|:......:..:.....|:...|  :..|..|:    .:||:..:|           
  Rat  1010 EGVGGTVADSLCMKAGESFLESHPRPFQCNQCGKTYRHGGS----LVNHRKIHQTGDFICPVCSR 1070

  Fly   160 --QNPAPNQNQSSNDPQHSGSNAGESGNPHVQQNGGPQNDPGNSFRTPDYYDPRHAAPQGGMLAP 222
              .|.|..:|...|.|:..||      .|.:    ||.::.|..      .:|::||..|...|.
  Rat  1071 CYPNLAAYRNHLRNHPRCKGS------EPQM----GPISEAGGR------SEPQNAAEAGQEQAV 1119

  Fly   223 PGFPPLHYLNK--GVLPMEQSGGGGGAGGGEAYALPEMLPAQQNGQQNAGPANTNANEGGAGANG 285
            .|     .|.:  .|.|:|:      ..|.:.....|....::..:|                  
  Rat  1120 VG-----QLQEELKVEPLEE------LAGVKEEVWEETTVKEEELEQ------------------ 1155

  Fly   286 SGGVGGATGASVGVGSVGVTS---GGRTGNGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQH 347
                |..||....|.|....|   .|||....|....::.......|.|..|.|.|....:|..|
  Rat  1156 ----GLETGCQTEVTSERPFSCEVCGRTYKHAGSLINHRQSHQTGHFGCQACSKGFSNLMSLKNH 1216

  Fly   348 DRIHTDARPFPCSECGKRFRQQSHLTQHLRIHA-------------NEKPFTCPYCSRSFRQR-A 398
            .|||.|.|.|.||||||.||.:..|..|.|:||             .::||.|..|.|::|.. :
  Rat  1217 RRIHADPRHFCCSECGKAFRLRKQLANHQRVHAERRKSRGTQKLIREDRPFRCGECGRTYRHAGS 1281

  Fly   399 ILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVP----- 458
            :||......:|.  ::||.|.|.:..:..|..|.|.|.|.....  ::|     ||....     
  Rat  1282 LLNHQCNHETGR--YSCPFCFKTYSNRKALKDHQRLHSDSQRRR--QSG-----WPQKTAAIHCA 1337

  Fly   459 -----FPG---------EDNDTKGDIA-GTGGGYHDEDSQGTPDGSG------------------ 490
                 |.|         |..::|.::| |.||.:..|||:...|..|                  
  Rat  1338 LCGCGFSGQGSLEQHLREHEESKLELASGQGGQHGTEDSKEDLDDWGLEGRSDDIESVLEHEVKR 1402

  Fly   491 -GMHYP----------SYFKDGK--------------GQKILPEVLQ---------------HIG 515
             |.|.|          |..:.||              |..:|.:.|.               |:.
  Rat  1403 PGEHSPGRPECSEVTESTQEIGKVDGCQGDRGQMNHNGAWVLQDQLTKPEGKLEDTVSRNPCHLS 1467

  Fly   516 VRPANMP-----------------------------LYVR----------------CPICDKEFK 535
            ...:|.|                             .|.:                |.:|.|||.
  Rat  1468 ESQSNGPTLRDTDSWNGADSSSQLQPESHCCSQCGKTYCQPDGLLNPSINRKDCHSCLLCSKEFL 1532

  Fly   536 QKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHT------------------------ 576
            ...|...|.  |:.::.:.|..|.:.|...|.|..|::.|.                        
  Rat  1533 NPVTTKNHN--HVAAQSFACSTCSRVFEAHSELATHMKTHAVEHSQGACQMEETRDPQAGMLEVD 1595

  Fly   577 --------------------------------------NEKPFGCMYCPRFFRQ----------R 593
                                                  .|:||.|..|.|.:|.          .
  Rat  1596 LPGPGKTQEAPSGLPRDPGENGEPANRGQGINFTAAEDKERPFCCAQCGRSYRHAGSLLNHQKAH 1660

  Fly   594 TI-----------------LNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTH-QGDRPFCCP 640
            ||                 |..|.|.||..|.|.|..|||.||..|.|..|.|.| ..:.||.| 
  Rat  1661 TIGLYPCSLCPKLLPNLLSLKNHSRTHTDPKRYSCNICGKAFRTAARLQGHGRVHAPQEGPFTC- 1724

  Fly   641 MPNCRRRFATENEVTKHIDNHMNPNTTKVRRQQQQQHQQQ 680
             .:|.|.|.......:|                |||||::
  Rat  1725 -SHCPRHFRHRISFLRH----------------QQQHQEE 1747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 7/19 (37%)
COG5048 355..666 CDD:227381 111/537 (21%)
zf-C2H2 357..379 CDD:278523 12/21 (57%)
C2H2 Zn finger 359..379 CDD:275368 11/19 (58%)
zf-H2C2_2 371..396 CDD:290200 10/37 (27%)
C2H2 Zn finger 387..407 CDD:275368 6/20 (30%)
zf-H2C2_2 400..424 CDD:290200 7/23 (30%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 527..547 CDD:275368 7/19 (37%)
zf-C2H2 553..575 CDD:278523 6/21 (29%)
C2H2 Zn finger 555..575 CDD:275368 6/19 (32%)
C2H2 Zn finger 583..603 CDD:275368 9/46 (20%)
zf-H2C2_2 596..620 CDD:290200 12/23 (52%)
C2H2 Zn finger 611..631 CDD:275368 10/19 (53%)
zf-H2C2_2 624..650 CDD:290200 10/26 (38%)
C2H2 Zn finger 639..661 CDD:275368 5/21 (24%)
Zfp646XP_008758161.1 C2H2 Zn finger 10..31 CDD:275368
C2H2 Zn finger 69..89 CDD:275368
C2H2 Zn finger 233..253 CDD:275368
C2H2 Zn finger 260..280 CDD:275368
C2H2 Zn finger 288..308 CDD:275368
C2H2 Zn finger 368..388 CDD:275368
C2H2 Zn finger 395..415 CDD:275368
C2H2 Zn finger 459..479 CDD:275368
C2H2 Zn finger 486..506 CDD:275368
C2H2 Zn finger 568..588 CDD:275368
C2H2 Zn finger 608..628 CDD:275368
C2H2 Zn finger 635..655 CDD:275368
C2H2 Zn finger 809..829 CDD:275368
C2H2 Zn finger 836..856 CDD:275368
C2H2 Zn finger 869..887 CDD:275368
C2H2 Zn finger 1038..1058 CDD:275368 5/23 (22%)
C2H2 Zn finger 1065..1085 CDD:275368 3/19 (16%)
C2H2 Zn finger 1173..1193 CDD:275368 4/19 (21%)
C2H2 Zn finger 1200..1220 CDD:275368 7/19 (37%)
C2H2 Zn finger 1228..1248 CDD:275368 11/19 (58%)
C2H2 Zn finger 1269..1286 CDD:275368 6/16 (38%)
C2H2 Zn finger 1296..1316 CDD:275368 7/19 (37%)
C2H2 Zn finger 1336..1356 CDD:275368 2/19 (11%)
C2H2 Zn finger 1498..1516 CDD:275368 1/17 (6%)
C2H2 Zn finger 1524..1542 CDD:275368 7/19 (37%)
C2H2 Zn finger 1550..1570 CDD:275368 6/19 (32%)
C2H2 Zn finger 1640..1660 CDD:275368 4/19 (21%)
C2H2 Zn finger 1667..1687 CDD:275368 3/19 (16%)
C2H2 Zn finger 1695..1715 CDD:275368 10/19 (53%)
C2H2 Zn finger 1724..1744 CDD:275368 7/37 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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