DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and Zfp418

DIOPT Version :10

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001178549.1 Gene:Zfp418 / 292548 RGDID:1311663 Length:660 Species:Rattus norvegicus


Alignment Length:363 Identity:125/363 - (34%)
Similarity:173/363 - (47%) Gaps:58/363 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 HSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTC 387
            ||..|.|:||.|||.|...|:||:|.|.||...|:.||:||:.|||...|..|.|.|..|||:.|
  Rat   314 HSGERPFECLECGKAFGCHSSLLRHQRTHTGEWPYECSDCGRLFRQIVSLITHQRTHTTEKPYEC 378

  Fly   388 PYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPH------LIFKN 446
            ..|.:||..:|.|..|.|:|:||||:.|..|||.|.|.|.|.:|.:.|....|:      |.|:.
  Rat   379 GQCEKSFSHKATLTVHQRVHTGEKPYHCEACGKSFSQSANLIKHSKIHTGEKPYECGECGLCFRQ 443

  Fly   447 G----PHPTLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYF--------- 498
            .    .|.....|:.|:...:                          .|..:..||         
  Rat   444 RATLMKHQRTHTSERPYECRE--------------------------CGKFFKQYFYLIEHRRIH 482

  Fly   499 ---------KDGKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYP 554
                     :.||.......:::|..|.....|  .:|..|.|.|:.|:.|.:|...|...|||.
  Rat   483 TTTEFYECEQCGKSYTQKATLIRHQRVHTGESP--YKCEECGKAFEYKSRLKRHQRTHTGERPYE 545

  Fly   555 CPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFR 619
            |.:|||.||:..:|.:|.:|||..||:.|..|.:.|.:|..|.:|.|:||||:||.||:|||.|.
  Rat   546 CAKCGKFFRESYNLAEHQKIHTKAKPYHCDQCGKCFSRRADLVKHQRVHTGERPYTCGECGKTFS 610

  Fly   620 QKAILDQHTRTHQGDRPFCCPMPNCRRRFATENEVTKH 657
            :...|.||.|.|.|:||:.|  ..|.:.|:..:.:|:|
  Rat   611 RTTNLVQHRRIHTGERPYEC--DQCGKSFSQVSTLTRH 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 11/19 (58%)
COG5048 355..666 CDD:227381 108/331 (33%)
C2H2 Zn finger 359..379 CDD:275368 10/19 (53%)
C2H2 Zn finger 387..407 CDD:275368 8/19 (42%)
C2H2 Zn finger 415..435 CDD:275368 9/19 (47%)
C2H2 Zn finger 527..547 CDD:275368 7/19 (37%)
C2H2 Zn finger 555..575 CDD:275368 8/19 (42%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
C2H2 Zn finger 611..631 CDD:275368 10/19 (53%)
C2H2 Zn finger 639..661 CDD:275368 5/19 (26%)
Zfp418NP_001178549.1 KRAB 24..64 CDD:460171
C2H2 Zn finger 266..286 CDD:275368
COG5048 290..647 CDD:227381 125/363 (34%)
C2H2 Zn finger 294..314 CDD:275368 125/363 (34%)
C2H2 Zn finger 322..342 CDD:275368 11/19 (58%)
C2H2 Zn finger 350..370 CDD:275368 10/19 (53%)
C2H2 Zn finger 378..398 CDD:275368 8/19 (42%)
C2H2 Zn finger 406..426 CDD:275368 9/19 (47%)
C2H2 Zn finger 434..454 CDD:275368 3/19 (16%)
C2H2 Zn finger 462..482 CDD:275368 3/45 (7%)
C2H2 Zn finger 490..510 CDD:275368 3/19 (16%)
C2H2 Zn finger 518..538 CDD:275368 7/19 (37%)
C2H2 Zn finger 546..566 CDD:275368 8/19 (42%)
C2H2 Zn finger 574..594 CDD:275368 7/19 (37%)
C2H2 Zn finger 602..622 CDD:275368 10/19 (53%)
C2H2 Zn finger 630..650 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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