DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and ztf-23

DIOPT Version :9

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_491096.1 Gene:ztf-23 / 171880 WormBaseID:WBGene00021846 Length:419 Species:Caenorhabditis elegans


Alignment Length:380 Identity:94/380 - (24%)
Similarity:139/380 - (36%) Gaps:83/380 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 FPCSECGKRFRQQSHLTQHL-RIHANEKPFTCPYCS-RSFRQRAILNQHIRIHS----------- 408
            |.|.||....:...||..|: ..|....||.|.||. .:....::::...:.||           
 Worm     8 FRCCECTVEEQTMEHLESHIWSRHLQAFPFKCAYCDFPALSAISLMDHFAQNHSDVAIVEFKRNL 72

  Fly   409 -GEKPFACPECGKHFRQKAILNQHVRTHQDVSPHL-----IFKNG--------PHPTLWPSDVPF 459
             .||.|.     |.......:.....:.||.|..:     :.:.|        |..:.:...|..
 Worm    73 EDEKRFR-----KMVADSIAIEIDETSQQDSSTQMTVLQPMMQQGTAQMILLPPEGSQYDEIVDH 132

  Fly   460 PGEDNDTKG---------------------DIAGTG---GGYHDED--------SQGTPDGSGGM 492
            .|.|.|..|                     |..|..   |.:.|.|        .|| |..|...
 Worm   133 RGPDEDDFGVLDDDENIEELIDDDDDDDYIDELGNPVFIGAHDDSDYILEDDLSPQG-PIRSSNN 196

  Fly   493 HYPSYFKDGKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPE 557
            ::..|.:..:..|::..|:  :.....:.|....|......|....|  ..|    :...:.|..
 Worm   197 YHLKYIRTRRMDKLIDNVV--VNATQRDSPEQEDCSTSGVAFADGQT--NSG----KMGRFSCDR 253

  Fly   558 CGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKC-GQCGKDFRQK 621
            |.:.|:.||.|.:|.|.|...|||.|.||.|.|.||..|..|:|:||||:|:.| .:|||.|...
 Worm   254 CSRTFKYQSKLDEHRRTHLGVKPFQCHYCTRQFSQRGALKTHMRLHTGERPFVCQWECGKQFASS 318

  Fly   622 AILDQHTRTHQGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNTTKVRRQQQQQ 676
            :....|.:||.|:||:.|.:  |.:.|...:.|.:|:.|..|       |:..||
 Worm   319 SAKSHHEKTHSGERPYICNV--CGKSFTKNSHVIRHLKNIHN-------RELAQQ 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368
COG5048 355..666 CDD:227381 91/368 (25%)
zf-C2H2 357..379 CDD:278523 7/22 (32%)
C2H2 Zn finger 359..379 CDD:275368 6/20 (30%)
zf-H2C2_2 371..396 CDD:290200 9/26 (35%)
C2H2 Zn finger 387..407 CDD:275368 3/20 (15%)
zf-H2C2_2 400..424 CDD:290200 6/35 (17%)
C2H2 Zn finger 415..435 CDD:275368 1/19 (5%)
C2H2 Zn finger 527..547 CDD:275368 4/19 (21%)
zf-C2H2 553..575 CDD:278523 8/21 (38%)
C2H2 Zn finger 555..575 CDD:275368 8/19 (42%)
C2H2 Zn finger 583..603 CDD:275368 10/19 (53%)
zf-H2C2_2 596..620 CDD:290200 13/24 (54%)
C2H2 Zn finger 611..631 CDD:275368 6/20 (30%)
zf-H2C2_2 624..650 CDD:290200 9/25 (36%)
C2H2 Zn finger 639..661 CDD:275368 5/21 (24%)
ztf-23NP_491096.1 C2H2 Zn finger 251..271 CDD:275368 8/19 (42%)
zf-H2C2_2 264..288 CDD:290200 12/23 (52%)
C2H2 Zn finger 279..299 CDD:275368 10/19 (53%)
zf-H2C2_2 291..317 CDD:290200 13/25 (52%)
C2H2 Zn finger 307..328 CDD:275368 6/20 (30%)
zf-H2C2_2 324..344 CDD:290200 8/21 (38%)
C2H2 Zn finger 336..357 CDD:275368 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24384
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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