DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and zgc:174646

DIOPT Version :9

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001116087.1 Gene:zgc:174646 / 100142637 ZFINID:ZDB-GENE-080305-6 Length:408 Species:Danio rerio


Alignment Length:362 Identity:126/362 - (34%)
Similarity:158/362 - (43%) Gaps:101/362 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 TGNGPGRPHK-----NKP---------HSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCS 360
            ||..|...|:     :||         |:..:.|.|..|||.|.|.|.|..|.||||..:||.|:
Zfish   117 TGGKPFTCHQCGKSFSKPSTLYRHMRIHTGEQPFTCTQCGKSFNQPSNLNLHMRIHTGEKPFTCT 181

  Fly   361 ECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQK 425
            :|||.|...|||.:|:.||..||||||..|.|||...:.||:|:|||:|||||.|.:|||.|.|.
Zfish   182 QCGKNFIHSSHLNEHMMIHTGEKPFTCTQCGRSFSLSSTLNRHMRIHTGEKPFTCTQCGKSFSQS 246

  Fly   426 AILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSG 490
            |.||:|:|.|...||                                                  
Zfish   247 ASLNRHMRIHTGESP-------------------------------------------------- 261

  Fly   491 GMHYPSYFKDGKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPC 555
                                              ..|..|.|.|...:.|.:|..||...:|:.|
Zfish   262 ----------------------------------FTCTQCGKSFSLSSYLNKHMRIHTGEKPFIC 292

  Fly   556 PECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQ 620
            ..|||.||..|||.||:.||..||||.|..|.:.||..:.||||:||||||||:.|.||||.|..
Zfish   293 TRCGKSFRHSSHLNQHMMIHNREKPFTCTCCGKSFRHSSSLNQHMRIHTGEKPFTCTQCGKSFSL 357

  Fly   621 KAILDQHTRTHQGDRPFCCPMPNCRRRFATENEVTKH 657
            .:...:|.:.| ..|.:.|  ..|.:.|.|..|:.:|
Zfish   358 SSYFKRHMKIH-SVRDYMC--LECEKTFITAAELKRH 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 10/19 (53%)
COG5048 355..666 CDD:227381 105/303 (35%)
zf-C2H2 357..379 CDD:278523 10/21 (48%)
C2H2 Zn finger 359..379 CDD:275368 9/19 (47%)
zf-H2C2_2 371..396 CDD:290200 15/24 (63%)
C2H2 Zn finger 387..407 CDD:275368 9/19 (47%)
zf-H2C2_2 400..424 CDD:290200 16/23 (70%)
C2H2 Zn finger 415..435 CDD:275368 11/19 (58%)
C2H2 Zn finger 527..547 CDD:275368 6/19 (32%)
zf-C2H2 553..575 CDD:278523 11/21 (52%)
C2H2 Zn finger 555..575 CDD:275368 11/19 (58%)
C2H2 Zn finger 583..603 CDD:275368 9/19 (47%)
zf-H2C2_2 596..620 CDD:290200 18/23 (78%)
C2H2 Zn finger 611..631 CDD:275368 7/19 (37%)
zf-H2C2_2 624..650 CDD:290200 6/25 (24%)
C2H2 Zn finger 639..661 CDD:275368 6/19 (32%)
zgc:174646NP_001116087.1 C2H2 Zn finger 68..88 CDD:275368
zf-H2C2_2 81..105 CDD:290200
C2H2 Zn finger 96..116 CDD:275368
zf-H2C2_2 108..132 CDD:290200 4/14 (29%)
C2H2 Zn finger 124..144 CDD:275368 3/19 (16%)
COG5048 <129..391 CDD:227381 121/348 (35%)
zf-H2C2_2 137..161 CDD:290200 7/23 (30%)
C2H2 Zn finger 152..172 CDD:275368 10/19 (53%)
zf-H2C2_2 164..187 CDD:290200 12/22 (55%)
C2H2 Zn finger 180..200 CDD:275368 9/19 (47%)
zf-H2C2_2 192..216 CDD:290200 14/23 (61%)
C2H2 Zn finger 208..228 CDD:275368 9/19 (47%)
zf-H2C2_2 221..245 CDD:290200 16/23 (70%)
C2H2 Zn finger 236..256 CDD:275368 11/19 (58%)
zf-H2C2_2 248..272 CDD:290200 10/107 (9%)
C2H2 Zn finger 264..284 CDD:275368 6/19 (32%)
zf-H2C2_2 276..301 CDD:290200 10/24 (42%)
C2H2 Zn finger 292..312 CDD:275368 11/19 (58%)
C2H2 Zn finger 320..340 CDD:275368 9/19 (47%)
zf-H2C2_2 332..356 CDD:290200 17/23 (74%)
C2H2 Zn finger 348..368 CDD:275368 7/19 (37%)
C2H2 Zn finger 375..395 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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