DRSC/TRiP Functional Genomics Resources

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Protein Alignment axo and Cntnap2

DIOPT Version :9

Sequence 1:NP_001246631.1 Gene:axo / 43923 FlyBaseID:FBgn0262870 Length:2179 Species:Drosophila melanogaster
Sequence 2:XP_038964953.1 Gene:Cntnap2 / 500105 RGDID:1307076 Length:1332 Species:Rattus norvegicus


Alignment Length:1239 Identity:301/1239 - (24%)
Similarity:477/1239 - (38%) Gaps:269/1239 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   461 GISCDCFGTHYEGEHCDIYTATIITLRGASYVSYRIYDWKDRVHSSTRRISLMFRTNFDDSALFY 525
            |:..:.:|       |. |.|.:|...|...:.||..:.|.:.....  |:|.|:|:..:..|.:
  Rat   173 GLRAEVYG
-------CS-YWADVINFDGHVVLPYRFRNKKMKTLKDV--IALKFKTSESEGVLLH 227

  Fly   526 ASGESLKHQYIAASIKNQSVHVEMDFGDN----------VMSTVLTDDLTRGYWHNLTILHEQRT 580
              ||..:..||...:|...:...::.|.|          |.|..|.||   .:||::.|..:.|:
  Rat   228 --GEGQQGDYITLELKKAKLVFSLNLGSNQLGPIYGHTSVTSGSLLDD---HHWHSVLIERQGRS 287

  Fly   581 VSIILDQQQKVLELPATASGNMLF---DPEIYFGGGPELHKKKGLASHNNFVGSLKYVYYNDISI 642
            :::.||:..:...    .:|...:   |.||.|||.| ...|...::..||.|.::.:.||.::|
  Rat   288 INLTLDRSMQHFR----TNGEFDYLDLDYEITFGGIP-FSGKPSSSNRKNFKGCMESINYNGVNI 347

  Fly   643 LYELQRGNPKVHYHGVLEAEFVENEVNVIPITYPFATSHIWWP--INHAEEFNIKFDFRSSRPGA 705
            . :|.| ..|:....|....|...|...:|:.:. |||::..|  :|. :.|::.|.||:..|..
  Rat   348 T-DLAR-RKKLEPSNVGNLSFACVEPYTVPVFFN-ATSYLEVPGRLNQ-DLFSVSFQFRTWNPSG 408

  Fly   706 VLAYSDVTTSAGNGFWEIRLTSDKLSFDLVPDVNNNVTHSTTIKINRAT-------SWHSVELDY 763
            :|.:|....:.||  .||.|...|:.      |:.|.|.:.|.:|:.::       .||.|..  
  Rat   409 LLLFSHFADNLGN--VEIDLVESKVG------VHINTTQTKTSQIDISSGSGLNDGQWHEVRF-- 463

  Fly   764 KLGEIRFTV-----DYRHTLSQMYGLTFNIGDKLIIGSSLK-------SAAM-GLVGCIRDIEIN 815
             |.:..|.|     |....:.....|....|::...|..|.       ||.. ...||::.|:::
  Rat   464 -LAKENFAVLTIDGDEASAVRTNSPLQVKTGERYYFGGFLNHMNNASHSALQPSFQGCMQLIQVD 527

  Fly   816 GHLIEPRHVVKTERVVG---EVALDNCNYIDPCKRPNTCEHGGKCFVKDDRVTCDCKHTGYIGKN 877
            ..|:....|  .:|..|   .|.:|.|..||.|. ||.|||||||....|...|.|..|||.|..
  Rat   528 DQLVNLYEV--AQRKPGSFANVTIDMCAIIDRCV-PNHCEHGGKCSQTWDSFKCTCDETGYSGAT 589

  Fly   878 CHFTKYRKTCEELALLGFTKSDVYLIDIDGNGVFPPAHVKCDFQSLENATKTIVEHNLPSQVDVR 942
            ||.:.|..:||....||.| |:.|.||.||:|...|..|.|:.  .|:...|||.|:|..|..|.
  Rat   590 CHNSIYEPSCEAYKHLGQT-SNYYWIDPDGSGPLGPLKVYCNM--TEDKVWTIVSHDLQMQTTVV 651

  Fly   943 SARESDFSFNIRYREFSPHMLQELISHSLYCTQYIKYDCYRAQLELHSA-----TWFTSSAKNLT 1002
            ......:|........|...:..:.|.:.||.||:.|.|..::| |::.     ||:...| |..
  Rat   652 GYNPEKYSVTQLIYSASMDQISAITSSAEYCEQYVSYFCKMSRL-LNTPDGSPYTWWVGKA-NEK 714

  Fly  1003 VDFLGNVKRG--ACPCSVNKTCVDPNQSCNCDVKENKWNSDEGY--YQD--PQSLGITNMYFLQQ 1061
            ..:.|..:.|  .|.|.:.:.|.||...||||....:|..|.|:  |:|  |.|..:..      
  Rat   715 HYYWGGSEPGIQKCACGIERNCTDPKYYCNCDADYKQWRKDAGFLSYKDHLPVSQVVVG------ 773

  Fly  1062 KDMDDEAQG---RITLGPLECVETNTQKYVVTFTTSQSYIE---VPGWRKGDIAFSFRTTGEKAI 1120
               |.:.||   ::::|||.|..........:|....||:.   ..|....||:|.|:|...:.:
  Rat   774 ---DTDRQGSEAKLSVGPLRCQGDRNYWNAASFPNPSSYLHFSTFQGETSADISFYFKTLIPRGV 835

  Fly  1121 LL-------FQPPIRPHYPSFMVALTGDDQLTFTFTLSTGTTRELVINSHRRLNGGEWHKIWIDY 1178
            .|       |          ..:.|....:::|:|.:..|.. |:|:.|...||..:||::..:.
  Rat   836 FLENLGNTDF----------IKLELKSSTEVSFSFDVGNGPV-EIVVRSPSPLNDDQWHRVTAER 889

  Fly  1179 NQYHVRFMINTDYQMLDLLPEE-EFGPFEG--------SMYIGGATFDLLKKLSVKAGLIGCFRG 1234
            |.......:       |.||:: ...|.||        .:::|||        ..:.|.:||.|.
  Rat   890 NVKQASLQV-------DRLPQQIRKAPTEGHTRLELYSQLFVGGA--------GGQQGFLGCIRS 939

  Fly  1235 LVVNGEILDIYSYMSVHLSEIIKDCKPSCVP--SPCRNGAQCKELWSSFKCVCNNPWAHIGEFCE 1297
            |.:||..||:.....| .|.....|...|..  :.|.||.:|.|.:..:.|.|:|. |:.|.||.
  Rat   940 LRMNGVTLDLEERAKV-TSGFKSGCSGHCTSYGANCENGGKCIEKYHGYSCDCSNT-AYDGTFCN 1002

  Fly  1298 TNINEKALTFINRESFLMRNY--LSVGA--TPVILMHGINGERDVLKGILNQDLLINLRTYDTNA 1358
            .::.    .|.....:|..|:  |:|.|  |.....:..:.::.:...:..:.:..:..|.....
  Rat  1003 KDVG----AFFEEGMWLRYNFQALTVTARDTGSRAENSADQQQHLAPDLAQEQIHFSFSTTKAPC 1063

  Fly  1359 LVLYANDHYNNFVHLYISLNREIVFLYNYGD--EIVNLTLLDDTLMASLKSIQVAIVRGEQETRM 1421
            ::||.:....:|:.:.:.....:...||.|.  |..|:. :|...||:          |:     
  Rat  1064 ILLYVSSLTTDFLAVLVKPTGNLQIRYNLGGTREPFNID-VDHRNMAN----------GQ----- 1112

  Fly  1422 HVNEHSVSIDRG----TLLLDEYANKPWSNPEKEVLSPHRPPAPPTEYFQFHVGGYDPANLLRPN 1482
               .|||:|.|.    .|.||.|....:          |.|.:..|.:       ..|.:|....
  Rat  1113 ---PHSVNITRHEKTIILKLDHYPAAGY----------HLPSSSDTIF-------NSPKSLFLGK 1157

  Fly  1483 V-------------DAPALEGYIGCVRGLKIGAQLIDLADINERNIAPTQ--------------E 1520
            |             :.|   |:.||            |:.:...:|||.:              :
  Rat  1158 VIETGKIDQEIHKYNTP---GFTGC------------LSRVQFNHIAPLKAALRQTNASAHVHIQ 1207

  Fly  1521 GVLPNCQIKCDAEPCKNGGTCQEHFAEQLSTCDCEHTSFLGEFCSEEKGADFSGESTLQRKFELP 1585
            |.|  .:..|.|.|..        .:...|..|..|...|     :...|||...         |
  Rat  1208 GDL--VESNCGASPLT--------LSPMSSATDPWHLDHL-----DSASADFPYN---------P 1248

  Fly  1586 GTGR 1589
            |.|:
  Rat  1249 GQGQ 1252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
axoNP_001246631.1 KU 119..171 CDD:238057
Laminin_G_2 275..411 CDD:280389
EGF_CA 433..476 CDD:238011 2/14 (14%)
Laminin_G_2 514..640 CDD:280389 35/138 (25%)
Laminin_G_2 698..817 CDD:280389 32/138 (23%)
EGF_CA 842..878 CDD:238011 19/35 (54%)
Laminin_G_2 1112..1240 CDD:280389 31/143 (22%)
EGF_CA 1256..1297 CDD:238011 13/42 (31%)
Laminin_G_2 1351..1503 CDD:280389 32/170 (19%)
LamG 1612..1733 CDD:304605
Cntnap2XP_038964953.1 FA58C 58..180 CDD:238014 1/6 (17%)
LamG 187..343 CDD:238058 40/167 (24%)
LamG 375..527 CDD:238058 40/164 (24%)
EGF_CA 555..590 CDD:238011 19/35 (54%)
COLFI 609..>632 CDD:413320 10/24 (42%)
LamG 800..943 CDD:238058 37/168 (22%)
EGF 967..>992 CDD:394967 7/24 (29%)
Laminin_G_2 1056..1188 CDD:396680 33/182 (18%)
4.1m 1283..1301 CDD:128590
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D171014at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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