DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment axo and Cntnap5b

DIOPT Version :9

Sequence 1:NP_001246631.1 Gene:axo / 43923 FlyBaseID:FBgn0262870 Length:2179 Species:Drosophila melanogaster
Sequence 2:XP_017454266.1 Gene:Cntnap5b / 301650 RGDID:1565194 Length:1307 Species:Rattus norvegicus


Alignment Length:1157 Identity:270/1157 - (23%)
Similarity:477/1157 - (41%) Gaps:199/1157 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   461 GISCDCFGTHYEGEHCDIYTATIITLRGASYVSYRIYDWKDRVHSSTR-RISLMFRTNFDDSALF 524
            |:..:.:|..|..:..|        ..|.|.:.||   :..:..|:.: .|||.|::...|..|.
  Rat   166 GMRMEVYGCSYRSDVAD--------FDGHSSLLYR---FNQKTMSTLKDMISLKFKSMQGDGVLL 219

  Fly   525 YASGESLKHQYIAASIKN--QSVHVEMDFGDNVMSTV--------LTDDLTRGYWHNLTILHEQR 579
            :  ||..:..||...::|  .::::.:|.|...:|::        |.||   ..||::.:....:
  Rat   220 H--GEGQRGDYITLELQNGRLALYLNLDGGQARLSSIAPSAILGSLLDD---QQWHSVLLERVGK 279

  Fly   580 TVSIILDQQQKVLELPATASGNMLFDPEIYFGGGPELHKKKGLASHNNFVGSLKYVYYNDISILY 644
            ..:..:|...:..::.|.... :..|.|:.|||.| :..|.|.....:|.|.::.:|||.::|:.
  Rat   280 QTNFTVDTNTEHFQIKAETDA-LDIDYELSFGGIP-IPSKPGTFLKKSFHGCIENLYYNGVNIID 342

  Fly   645 ELQRGNPKVHYHGVLEAEFVENEVNVIPITYPFA-TSHIWWP-INHAEEFNIKFDFRSSRPGAVL 707
            ..:|...:::..|  ...|..:|..::|||:..: :|::..| ....:..::.|.||:.....:|
  Rat   343 LAKRRKHQIYSVG--NVTFSCSEPQIVPITFVNSRSSYLLLPGTPRIDGLSVSFQFRTWNEDGLL 405

  Fly   708 AYSDVTTSAG-------NGFWEIRLTSDKLSFDLVPDVNNNVTHSTTIKINRATS---WHSVELD 762
            ..::::.|:|       .|  .:||...|::           .|.|.|......:   ||.|.::
  Rat   406 LSTELSESSGTLLLILEGG--TLRLLIKKVA-----------GHGTEIITGSGLNDGLWHFVSIN 457

  Fly   763 YKLGEIRFTVD---------------YRHTLSQMYGLTFNIGDKLIIGSSLKSAAMGLVGCIRDI 812
            .:...:..|:|               |........|...|:.|     |...:......||:|.|
  Rat   458 ARRNRVTLTLDNDAASLPPDISWLQIYSGNSYYFGGCPDNLTD-----SQCLNPIKAFQGCMRLI 517

  Fly   813 EINGHLIEPRHVVKTER----VVGEVALDNCNYIDPCKRPNTCEHGGKCFVKDDRVTCDCKHTGY 873
            .|:.   :|:.::..::    ...::.:|.|:..|.| .||.|||||.|........|:|.:|||
  Rat   518 FIDN---QPKDLISVQQGSLGNFSDLHIDLCSIKDRC-LPNYCEHGGHCVQTWTTFYCNCSNTGY 578

  Fly   874 IGKNCHFTKYRKTCEELALLGFTKSDVYLIDIDGNGVFPPAHVKCDFQSLENATKTIVEHNLPSQ 938
            .|..||.:.|.::||.....|...|..:.:|.||:|...|..:.|:.  .|:.....::||:...
  Rat   579 TGATCHDSIYEQSCEVYRHRGNNTSGFFFVDSDGSGPLEPLQLYCNI--TEDKIWMTIQHNITEL 641

  Fly   939 VDVR-SARESDFSFNIRYREFSPHMLQELISHSLYCTQYIKYDCYRAQLELHSA-----TWFTSS 997
            ..|: |..|..:|..:.|.. |...|..||..|.||.|.:.|.|.|::| |::.     ||:...
  Rat   642 TQVQGSNAEKPYSMTLNYGG-SMDQLVALIDGSEYCEQEVTYHCRRSRL-LNTPDGAPFTWWIGR 704

  Fly   998 AKNLTVDFLGNVKRG--ACPCSVNKTCVDPNQSCNCDVKENKWNSDEGYYQDPQSLGITNMYFLQ 1060
            : |....:.|....|  .|.|.:.::|:|....||||...::|.:|.|:......|.:|.:....
  Rat   705 S-NEKHHYWGGSVPGIQKCGCGLEQSCLDIGHFCNCDADTDEWANDTGFLSFKDHLPVTQIIITD 768

  Fly  1061 QKDMDDEAQGRITLGPLECVETNTQKYVVTFTTSQSYIEVPGWR---KGDIAFSFRTTGEKAILL 1122
            ....:.||..||  |||.|.........|:|:|..||:..|...   ..||:|.|:||....:.:
  Rat   769 TNRSNSEAAWRI--GPLRCYGDRHFWNAVSFSTEASYLHFPTSHVEFSIDISFFFKTTALSGVFI 831

  Fly  1123 FQPPIRPHYPSFM-VALTGDDQLTFTFTLSTGTTRELVINSHRRLNGGEWHKIWIDYNQYHVRFM 1186
            ....|:    .|: :.|:...::||...:..|.| ||::.|...||..:||.|..:.|      :
  Rat   832 ENLGIK----DFLRLELSSPSEVTFAIDVGNGPT-ELLVQSPSPLNDNQWHYIQAERN------L 885

  Fly  1187 INTDYQMLDLLPE-----EEFGPFE----GSMYIGGATFDLLKKLSVKAGLIGCFRGLVVNGEIL 1242
            ..|..| :|..|.     .|.|.|:    ..|::||.:       |.:.|.:||.|.|.:||:.:
  Rat   886 KETSLQ-VDNFPRIMRETTEKGHFQLQLNSQMFVGGTS-------SRQKGFLGCIRSLHLNGQNI 942

  Fly  1243 DIYSYMSVHLSEIIKDCKPSC--VPSPCRNGAQCKELWSSFKCVC-NNPWAHIGEFCETNI---- 1300
            |:.....| .|.:...|...|  ..:.|.||.:|.|..:|:.|.| .:|:.  |.||:..|    
  Rat   943 DLEERGMV-TSGVRPGCPGHCSSYGNNCHNGGKCVEKHNSYSCDCTKSPYE--GPFCQKEISALF 1004

  Fly  1301 -NEKALTFINRESFLMRNYLSVGATPVILMHGINGERDVLKGILNQDLLINLRTYDTNALVLYAN 1364
             :..::|::.:|.:.:....|..::.:.        .|.:  :..:.:|::..|.....|:||.|
  Rat  1005 DSTTSITYMFQEPYPVSKNTSTSSSAIY--------TDTV--LSKETILLSFVTAQAPTLLLYLN 1059

  Fly  1365 DHYNNFVHLYISLNREIVFLYNYGDEIVNLTLLDDTLMASLKSIQVAIVRGEQETRMHVNEHSVS 1429
            ....:|:.|.:|.|..:..||:......::..:....:|:.:...|.:.|...|..:.:::...|
  Rat  1060 FSTPSFLALLLSRNGSLQILYHLSKGESHMFTVSTENLANRRVHHVKMNRDGTELSIQMDQQLFS 1124

  Fly  1430 IDRGTLLLDEYANKPWSNPEKEVLSPHRPPAPPTEYFQFHVG------GYDP----ANLLRPNVD 1484
            .           |.|.   |.|.|:..          ...:|      |.||    ||.|     
  Rat  1125 Y-----------NFPL---EAEFLTVR----------SLILGKVTETLGLDPRVARANSL----- 1160

  Fly  1485 APALEGYIGCVRGLKIGAQLIDLADINERNIAP-TQEGVLP--NCQIKCDAE 1533
                 |:|||:..::........|.:...:||| |.:|.|.  :|....|::
  Rat  1161 -----GFIGCLSSVQYNHIAPLKAALRHASIAPATVQGSLREFSCGSMVDSD 1207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
axoNP_001246631.1 KU 119..171 CDD:238057
Laminin_G_2 275..411 CDD:280389
EGF_CA 433..476 CDD:238011 3/14 (21%)
Laminin_G_2 514..640 CDD:280389 31/135 (23%)
Laminin_G_2 698..817 CDD:280389 27/143 (19%)
EGF_CA 842..878 CDD:238011 16/35 (46%)
Laminin_G_2 1112..1240 CDD:280389 36/137 (26%)
EGF_CA 1256..1297 CDD:238011 13/43 (30%)
Laminin_G_2 1351..1503 CDD:280389 32/161 (20%)
LamG 1612..1733 CDD:304605
Cntnap5bXP_017454266.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I11858
eggNOG 1 0.900 - - E1_KOG3516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D171014at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.780

Return to query results.
Submit another query.