DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rok and cdc42bpb

DIOPT Version :9

Sequence 1:NP_536796.2 Gene:Rok / 43916 FlyBaseID:FBgn0026181 Length:1390 Species:Drosophila melanogaster
Sequence 2:XP_004917233.2 Gene:cdc42bpb / 733471 XenbaseID:XB-GENE-1005934 Length:1731 Species:Xenopus tropicalis


Alignment Length:1310 Identity:386/1310 - (29%)
Similarity:645/1310 - (49%) Gaps:247/1310 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LEREMRDPTSICNVDCLLDTVSALVSDCDHESLRRLKNIEQYAAKYKPLAMQINQLRMNVEDFHF 89
            |:...|:..:: :|:.|||.:..|.::|.|.:|||.|.:.::....||....:..::::.:||..
 Frog    15 LDGPQRNEAAL-SVETLLDVLLCLYTECSHSTLRRDKYVSEFLEWAKPFTDLLKGMQLHRDDFEI 78

  Fly    90 IKLIGAGAFGEVQLVRHKSSSQVYAMKRLSKFEMMKRPDSAFFWEERHIMAHANSEWIVQLHFAF 154
            ||:||.||||||.:||.||:.::||||.|:|:||:||.::|.|.|||:::.:.:.:||..||:||
 Frog    79 IKVIGRGAFGEVAVVRLKSTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITSLHYAF 143

  Fly   155 QDAKYLYMVMDFMPGGDIVSLMGDYD--IPEKWAIFYTMEVVLALDTIHNMGFVHRDVKPDNMLL 217
            ||..|||:|||:..|||:::|:..::  :||..|.||..|:|||:.:||.:.:||||:||||:||
 Frog   144 QDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIHSIHQLHYVHRDIKPDNVLL 208

  Fly   218 DSYGHLKLADFGTCMRMGANGQVVSSNAVGTPDYISPEVLQS--QGVDNEYGRECDWWSVGIFLY 280
            |..||::|||||:|::|.|:|.|.||.|||||||||||:||:  .|: .:||.||||||:|:.:|
 Frog   209 DMNGHIRLADFGSCLKMNADGTVQSSVAVGTPDYISPEILQAMEDGM-GKYGPECDWWSLGVCMY 272

  Fly   281 EMLFGETPFYADSLVGTYGKIMDHKNSLSFPPEV-EISEQAKALIRAFLTDRTQRLGRYGIEDIK 344
            |||:|||||||:|||.||||||:|:....||..: ::||.||.:|:..:..|.:|||:.||:|.|
 Frog   273 EMLYGETPFYAESLVETYGKIMNHEERFQFPSHIGDVSESAKDVIQRLICSRERRLGQNGIDDFK 337

  Fly   345 AHPFFRNDTWSFDNIRESVPPVVPELSSDDDTRNFEDIERD--EKPEEVFP-VPKGFDGNHLPFI 406
            |||||....|  ||||....|.:|::||..||.|| |::.|  ..||.:.| ...||.|.||||:
 Frog   338 AHPFFEGIDW--DNIRNLEAPYIPDVSSPYDTSNF-DVDDDVLRNPEVIPPSTHSGFSGFHLPFV 399

  Fly   407 GFTYTGDYQLLS----SDTV--DAESKEANVANSGAASNNHGHGHNHRHRPSNSNELKRLEALLE 465
            |||||.|.....    .||:  :|.:|:.:|                :....||.::...|..:.
 Frog   400 GFTYTTDSCFSDRGSLKDTIHSNAVTKDEDV----------------QRGLQNSLQIDAYERRIR 448

  Fly   466 RERGRSEALEQQDAGLRQQIELITKREAELQ---RIASEYEKDLALRQHNYKVAMQKVEQEIELR 527
            |       |||:...|.::::..|:....||   |......::..:|         |:.:|||..
 Frog   449 R-------LEQEKLELNRKLQESTQTVQSLQGGSRTTGTLTREKEIR---------KLNEEIERL 497

  Fly   528 KKTEALLVETQRNLENEQKTRARDLNINDKVVSLEKQLLEMEQSYKTETENTQKLKKHNAELDFT 592
            |...:.....:|.||:....|.:..:..:|:..||||    .::.|.|.::   |:|..::....
 Frog   498 KNKISDSNRIERQLEDVVALRQQYEDSTNKMKGLEKQ----HRALKQERDD---LQKQFSDAQER 555

  Fly   593 VKSQEEKVRDMVDMIDTLQKHKEELGQENAELQALVVQEKNLRSQLKEMHKEAENKMQTLINDIE 657
            :|||.::::|........|:...||.::.|||::   |:..|..||::..:|.|..||.:     
 Frog   556 LKSQTKELKDANQHRKVTQQEFAELTEKMAELRS---QKLKLSRQLRDKEEELELVMQKI----- 612

  Fly   658 RTMCREQKAQEDNRALLEKISDLEKAHAG---------------LDFE---LKAAQG-------- 696
            .||.:|.:..|..|..||...|...|.|.               |:.|   ||..||        
 Frog   613 DTMRQENRKSEKARKELEAQLDDATAEASKERKLREHSEIFCKQLESEVESLKLKQGVRTPGATL 677

  Fly   697 RYQQEV-KAHQETEK------SRLVSREEANLQEVKALQSKLNEEKSARIKADQHSQEKERQLSM 754
            .:|||: |...|.||      ..|:.||.|:..|:|.::.::::.:|             :||: 
 Frog   678 EHQQELSKVKSELEKKNLYFEEELLRRETAHSFEMKNIKKEIHDSES-------------QQLA- 728

  Fly   755 LSVDYRQIQLRLQKLEGECRQE-SEKVAALQSQLDQEHS----KRNALLSELSLHSSEVAHLRSR 814
            |..:...::.:|:|.:.|.:.| .|.|.|::.:.::|.|    :...|.|:....||.|..|..:
 Frog   729 LKKETLMLKDKLEKAKRERQSELEEAVGAVKEKYERERSILLDENKKLFSQTERLSSFVDKLTEQ 793

  Fly   815 ENQLQ---KELSTQREAKRRFEEDLTQL---------KSTHHEALAN--NRELQAQLEAEQCFSR 865
            ..||:   ::|:.::|:...:|..:.::         ...:.:|||:  ..||:: |.:....||
 Frog   794 NRQLEDDLQDLTAKKESVAHWEAQIAEIIQWVSDEKDARGYLQALASKMTEELES-LRSSSLGSR 857

  Fly   866 LYKTQA--------NENREESAERLSKIEDLEEERVSLKHQVQVAVARADSEALARSIAEETVAD 922
            .....:        |.:|.:...::.:.:.|:   :|.:.::|.|:   |:|..|:.:.:|.:..
 Frog   858 ALPDLSFPQGLAPYNSDRLDPLWKVRRSQKLD---MSARLELQSAL---DAEIRAKQVVQEELRK 916

  Fly   923 LEKEKTIKELELKDFVMKHRNEINAKEAALATLKEAENELHKKLGQKAAEYEDLVQQHKKQQEEL 987
            .:....:.|.:|||..:|::.          .|:|.|| |.|||.:|                  
 Frog   917 AKDSNILFESKLKDAELKNKE----------LLEEMEN-LKKKLEEK------------------ 952

  Fly   988 ALMRSSKDEEITKLLDKCKNEVLLKQVAVNKLAEVMNRRDS-----DLPKQKNKARST---AELR 1044
                 .||:...|:.|  .:|.:.:....:.|...:..|.|     |:|..|.:..::   ....
 Frog   953 -----YKDDSGLKIPD--FHESIFEYFNTSPLPHDLTLRSSTISEPDIPSPKPEVSASLAHPSTN 1010

  Fly  1045 KKEKEMRRLQQ-------------ELSQERDKFNQLLLKHQDLQQLCAEEQQLKQKMVME-IDCK 1095
            .:::|:.|.|.             .:|..:.|.:||::|.......|:....|...:|.: ..|:
 Frog  1011 DQQEELSRSQSRTQPAPSPTFTPISVSIPKPKAHQLIIKSFVNPTQCSHCTSLMVGLVRQGYACE 1075

  Fly  1096 ATEIENLQSKLNETASLSSADNDPE---------------DSQHSSLLSLTQDSVFEGWLSVPNK 1145
            ....         ...:|..|:.|:               |.|...      .:.::|::.:|..
 Frog  1076 VCPF---------ACHVSCKDSAPQVCPIPAEQAKRPLGVDVQRGI------GTAYKGYVRIPKP 1125

  Fly  1146 QNRRRGHGWKRQYVIVSSRKIIFYNSDIDKHNTTD----AVLILDL-SKVYHVRSVTQGDVIRAD 1205
            ...::  ||:|.:.:|...|:..|  |:.:..:|.    :..::|| .:.:.|.||...|||.|.
 Frog  1126 TGVKK--GWQRAFAVVCDCKLFLY--DVPEGRSTQPGVVSSQVVDLRDEDFSVSSVLASDVIHAT 1186

  Fly  1206 AKEIPRIFQL 1215
            .|:||.||::
 Frog  1187 RKDIPCIFRV 1196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RokNP_536796.2 STKc_ROCK 61..411 CDD:270747 180/357 (50%)
S_TKc 87..349 CDD:214567 146/266 (55%)
SbcC 484..1088 CDD:223496 147/687 (21%)
Rho_Binding 963..1027 CDD:286056 10/63 (16%)
PH_ROCK 1134..1250 CDD:269948 24/87 (28%)
C1 1254..1307 CDD:197519
cdc42bpbXP_004917233.2 STKc_MRCK_beta 3..411 CDD:270774 195/400 (49%)
Smc <375..804 CDD:224117 121/489 (25%)
KELK 528..606 CDD:406277 23/87 (26%)
DMPK_coil 895..944 CDD:117396 13/61 (21%)
C1_MRCKbeta 1044..1096 CDD:410415 10/60 (17%)
PH_MRCK 1103..1238 CDD:269949 26/104 (25%)
CNH 1264..1529 CDD:395630
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D759391at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.