DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rok and Tacc3

DIOPT Version :9

Sequence 1:NP_536796.2 Gene:Rok / 43916 FlyBaseID:FBgn0026181 Length:1390 Species:Drosophila melanogaster
Sequence 2:XP_006251391.2 Gene:Tacc3 / 360962 RGDID:1302948 Length:698 Species:Rattus norvegicus


Alignment Length:616 Identity:127/616 - (20%)
Similarity:212/616 - (34%) Gaps:197/616 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 PFYADSLV-GTYGKIMDH-KNSLSFPPEVEISEQAKALIRAFLTDRTQRLGRYGIEDIKAHPFFR 350
            ||.:||.. |...|:.:. ||.||.|    ::||..|                |..|:::.|..:
  Rat   170 PFGSDSKYNGQKAKLPESPKNRLSLP----VAEQLSA----------------GPTDVESSPSHQ 214

  Fly   351 NDTWSFDNIRESVPPVVPE----LSSDDDTR-------------NFEDIERDEKPEEVFPVPKGF 398
            ......|::     |||..    |.::|:.:             :|.|.|....|.|..|.|...
  Rat   215 LPVAPVDDV-----PVVQMAAEILKAEDELQEGILNSLSPSAFTSFPDGELVTPPIEPMPEPSPQ 274

  Fly   399 DGNHL-----------PFIGFTYTGDYQLLSSDTVDAESK---EANVANSGAASNNHGHGHNHRH 449
            ....|           |.:..|..|...||.|:.|....|   |.....|....::.........
  Rat   275 GPEPLLDSEPVTPPVKPVLEPTPQGPEPLLDSEPVTPPVKPVLEPTPQGSEPLLDSEPVTLPVEP 339

  Fly   450 RPSNSNELKRLEALLERE--------------RGRSEALEQQDAGLRQQIELI-TKREAE-LQRI 498
            .|.:|::  ..|.||:.|              :|....|:.::...|...|:: ...|.: |::.
  Rat   340 VPESSHQ--GPEPLLDSEPVTLPVEPVPESSHQGPEPLLDPKEESFRDPAEVLGAGAEVDYLEQF 402

  Fly   499 ASEYEKDLALRQHNYKVAMQKVEQEIELR----------------------KKTEALLVETQ--- 538
            .:...|:.|.|:.:..:....:.:|..||                      ..|||.||:..   
  Rat   403 GTSSFKESAWRKQSLYLKFDPLLKESPLRSMPVPVAPVTNSTQDTEESGSGNPTEAKLVDLDFLG 467

  Fly   539 ----------------RNLENEQ------KTRARDLNINDKVVS-LEKQLLEMEQSYKTETENTQ 580
                            |.|...:      |...:||   |.||: ::::.||:...|  |..||:
  Rat   468 GLDVPVSAPPLCVLEPRGLLPAEPIVDVLKYSQKDL---DAVVNVMQQENLELRNKY--EDLNTK 527

  Fly   581 KLKKHNAELDF---TVKSQE--EKVRDMVDMIDTLQKHKEELGQENAELQALVVQEKNLRSQLKE 640
            .|:.......|   ..||.|  ||.:::.:  |.:||...|..|..|:|.::   ||:.....|.
  Rat   528 YLEMGKIVDGFEKIVYKSMEEAEKQKELAE--DKIQKILRERDQLTADLNSM---EKSFSDLFKR 587

  Fly   641 MHKEAENKMQTLINDIERTMCREQKAQEDNRALLEKISDLEKAHAGLDFELKAAQGRYQQEVKAH 705
            ..|:.|     :|...::.....:|..||....:.|                  :|:..|.:|||
  Rat   588 FEKQKE-----VIEGYQKNEDSLKKCVEDYIVKIGK------------------EGQRYQALKAH 629

  Fly   706 QETEKSRLVSREEANLQEVKALQSKLNEEKSARIKADQHSQEKERQLSMLSVDYRQIQLRLQKLE 770
            .| ||.::.:      :|:..::||...|..|                 |....|:.||::|.||
  Rat   630 AE-EKLKMAN------EEIAQVRSKAQAEALA-----------------LQASLRKAQLQIQSLE 670

  Fly   771 GECRQESEKVAALQSQLDQEHSKRNALLSEL 801
            ....|::           :|:.:.|.:..||
  Rat   671 KTVEQKT-----------KENDELNRICDEL 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RokNP_536796.2 STKc_ROCK 61..411 CDD:270747 33/152 (22%)
S_TKc 87..349 CDD:214567 17/62 (27%)
SbcC 484..1088 CDD:223496 77/373 (21%)
Rho_Binding 963..1027 CDD:286056
PH_ROCK 1134..1250 CDD:269948
C1 1254..1307 CDD:197519
Tacc3XP_006251391.2 PHA03247 <248..492 CDD:223021 43/245 (18%)
TACC 498..691 CDD:398605 60/261 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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