DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rok and Dmpk

DIOPT Version :9

Sequence 1:NP_536796.2 Gene:Rok / 43916 FlyBaseID:FBgn0026181 Length:1390 Species:Drosophila melanogaster
Sequence 2:XP_006539579.1 Gene:Dmpk / 13400 MGIID:94906 Length:653 Species:Mus musculus


Alignment Length:635 Identity:208/635 - (32%)
Similarity:320/635 - (50%) Gaps:126/635 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MDVERRRRANTLEREMRDPTSICNVDCLLDTVSALVSDCDHESLRRLKNIEQYAAKYKPLAMQIN 78
            |..|.|.|  .|::.:.|| ....::.|||.:..:..:.....|.:.|.:..:....:|:|.::.
Mouse     1 MSAEVRLR--QLQQLVLDP-GFLGLEPLLDLLLGVHQELGASHLAQDKYVADFLQWVEPIAARLK 62

  Fly    79 QLRMNVEDFHFIKLIGAGAFGEVQLVRHKSSSQVYAMKRLSKFEMMKRPDSAFFWEERHIMAHAN 143
            ::|:..:||..:|:||.|||.||.:|:.|.:.||||||.::|::|:||.:.:.|.|||.::...:
Mouse    63 EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVKGD 127

  Fly   144 SEWIVQLHFAFQDAKYLYMVMDFMPGGDIVSLMGDYD--IPEKWAIFYTMEVVLALDTIHNMGFV 206
            ..||.||||||||..|||:||::..|||:::|:..:.  ||.:.|.||..|:|:|:|::|.:|:|
Mouse   128 RRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYV 192

  Fly   207 HRDVKPDNMLLDSYGHLKLADFGTCMRMGANGQVVSSNAVGTPDYISPEVLQSQGVD---NEYGR 268
            |||:||||:|||..||::|||||:|:::..:|.|.|..|||||||:|||:||:.|..   ..||.
Mouse   193 HRDIKPDNILLDRCGHIRLADFGSCLKLQPDGMVRSLVAVGTPDYLSPEILQAVGGGPGAGSYGP 257

  Fly   269 ECDWWSVGIFLYEMLFGETPFYADSLVGTYGKIMDHKNSLSFP-PEVEISEQAKALIRAFLTDRT 332
            |||||::|:|.|||.:|:|||||||...||.||:.::..||.| .:..:.|:|:.|||..|....
Mouse   258 ECDWWALGVFAYEMFYGQTPFYADSTAETYAKIVHYREHLSLPLADTVVPEEAQDLIRGLLCPAE 322

  Fly   333 QRLGRYGIEDIKAHPFFRNDTWSFDNIRESVPPVVPELSSDDDTRNFEDIERD------------ 385
            .||||.|..|.:.||||....|  :.:|:||||..|:.....||.||:.:|..            
Mouse   323 IRLGRGGAGDFQKHPFFFGLDW--EGLRDSVPPFTPDFEGATDTCNFDVVEDRLTAMVSGGGETL 385

  Fly   386 EKPEEVFPVPKGFDGNHLPFIGFTYT----GDYQLLSSDTVDAESKEANVANSGAASNNHGHGHN 446
            ...:|..|:     |..|||:|::|.    .|.|:.....::.|:.:..|               
Mouse   386 SDMQEDMPL-----GVRLPFVGYSYCCMAFRDNQVPDPTPMELEALQLPV--------------- 430

  Fly   447 HRHRPSNSNELKRLEALLERERGRSEALEQQDAGLRQQIELITKREAELQRIASEYEKDLALRQH 511
                    ::|:.|:.             |.......|:    ..||:|                
Mouse   431 --------SDLQGLDL-------------QPPVSPPDQV----AEEADL---------------- 454

  Fly   512 NYKVAMQKVEQEIELRKKTEALLVETQRNLENEQKTRARDLNINDKVVSLEKQLLEMEQSYKTET 576
               ||:.....|.|    |...|.:.|..||.|..||.          ||.::|    ::.:|..
Mouse   455 ---VAVPAPVAEAE----TTVTLQQLQEALEEEVLTRQ----------SLSREL----EAIRTAN 498

  Fly   577 ENTQKLKKHNAELDFTVKSQEEKVRDMVDMIDTLQKHKEELGQENAELQA 626
            :|            |:.:.||.:||:.     .|:.|..:|.:....|||
Mouse   499 QN------------FSSQLQEAEVRNR-----DLEAHVRQLQERMEMLQA 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RokNP_536796.2 STKc_ROCK 61..411 CDD:270747 157/367 (43%)
S_TKc 87..349 CDD:214567 131/267 (49%)
SbcC 484..1088 CDD:223496 32/143 (22%)
Rho_Binding 963..1027 CDD:286056
PH_ROCK 1134..1250 CDD:269948
C1 1254..1307 CDD:197519
DmpkXP_006539579.1 PKc_like 69..405 CDD:389743 153/342 (45%)
DMPK_coil 472..532 CDD:117396 22/91 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0612
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D759391at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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