DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gk1 and C55B6.1

DIOPT Version :9

Sequence 1:NP_524655.1 Gene:Gk1 / 43913 FlyBaseID:FBgn0025592 Length:538 Species:Drosophila melanogaster
Sequence 2:NP_001024503.1 Gene:C55B6.1 / 180984 WormBaseID:WBGene00016939 Length:523 Species:Caenorhabditis elegans


Alignment Length:570 Identity:130/570 - (22%)
Similarity:235/570 - (41%) Gaps:122/570 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 FVGAIDEGTTSARFIIFRA-------------------GTDEIVCFHQIEVESIFQ------KEG 58
            ||..:|.|||:.|.:::.:                   ..||::.  :||.|.:|.      |:.
 Worm     8 FVLTVDIGTTTIRSVVYDSKCKERGSYQEKVNTIYTTRNDDEVLV--EIEPEQLFLQFLRVIKKA 70

  Fly    59 WCEQDPMAIVNTVNECITGACKKLVAVGGKVEEIITIGITNQRESTVVWDRNSGQPLVNAIIWLD 123
            :....|.|.|:                         :|:..||.|.|:|::.:.:.....|.|.|
 Worm    71 YETLPPNAHVD-------------------------VGLCTQRNSIVLWNKRTLKEETRIICWND 110

  Fly   124 NRTTSTVEELLETIPNNARNINYLRPLCGLPL-----------SPYFSGVKLRWLRDNVP----V 173
            .|..           |...|:|....|..|.|           :.:.:..:|::|...|.    |
 Worm   111 KRAN-----------NKCHNLNNSFLLKALNLAGGFLHFVTRKNRFLAAQRLKFLGGMVSHRLMV 164

  Fly   174 VSQAMEK-------GTAMFGTIDTWLMYNLTGGKDCGVHKTDVTNASRTMLMNIETLQWDANLLK 231
            .....||       |...:|:::|||   |.......:...:.:|.|.:.:.:.....::..::|
 Worm   165 TIDRSEKLKLMKADGDLCYGSLETWL---LMRSSKSNILCVEASNISPSGMFDPWIGAYNTLIMK 226

  Fly   232 FFGLPKTIL-PEICSSSEFYGSI----AQGVLQGIGITSVLGDQQAALVGQQCLAKGQAKATYGT 291
            ..|.|..:| |.:.|:.:....:    :..:.:...|:|::.|||||:.|.....:|..|.|.||
 Worm   227 IIGFPTDMLFPIVDSNLKDMNKLPIIDSSHIGKEFTISSIIADQQAAMFGCGTWERGDVKITLGT 291

  Fly   292 GCFLLYNTGPSIVHSTHGLLTTVGYQLGRKAVPFYALEGSVSIAGAAFNWLRDNMNLIQNSGQIE 356
            |.|:..:||.....|..||...||:::..: ..|.| ||:........:|.: ::.|..:..:..
 Worm   292 GTFVNVHTGKVPYASMSGLYPLVGWRINGE-TDFIA-EGNAHDTAVILHWAQ-SIGLFNDVTETS 353

  Fly   357 TMASTVDNSLDVYFVPAFNGLYAPYWNQDA-RGVICGLSEETTSEHIVRATLEAVCFQVRDILDS 420
            .:|.:|::|..|.|:|||.|:..|..::.| .|.:| :..:||..|:|||.||::.|:|..|..:
 Worm   354 DIALSVNDSNGVVFIPAFCGIQTPINDETACSGFMC-IRPDTTKVHMVRAILESIAFRVYQIYAA 417

  Fly   421 MHKDCKI-PLAKLMVDGGMTVNNLFLQLQSDLVGIQVLRAKIAE-TTALGAAMAAYKAVENRYQM 483
            ...:..| ..:.:.:.||::.||...|..:||:|.:|.|...:: ..|.|.|:           :
 Worm   418 AESEVNINKNSPVRICGGVSNNNFICQCIADLLGRKVERMTDSDHVAARGVAL-----------L 471

  Fly   484 EAPLSKSGPREAIKPSISATD---------RNL--RYQKWKMAIDRSLNW 522
            ....|....:|.::..::..|         :.|  .:|.||.|:||.|.:
 Worm   472 TGFSSGIWTKEKLRELVTVEDIFTPNYESRKGLLKTFQTWKKAVDRCLGF 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gk1NP_524655.1 glycerol_kin 18..522 CDD:273549 130/568 (23%)
FGGY_GK1-3_metazoa 18..522 CDD:212664 130/568 (23%)
C55B6.1NP_001024503.1 NBD_sugar-kinase_HSP70_actin 8..518 CDD:388382 128/565 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D352321at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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