DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF1 and Qki

DIOPT Version :10

Sequence 1:NP_524654.2 Gene:SF1 / 43912 FlyBaseID:FBgn0025571 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001401394.1 Gene:Qki / 499022 RGDID:1584886 Length:341 Species:Rattus norvegicus


Alignment Length:421 Identity:97/421 - (23%)
Similarity:162/421 - (38%) Gaps:151/421 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 ERSPSPEPIY----SSDGKRLNTRE-----FRYRKRLEEQRHQLIVK---MQTVNPEFKPPADYK 385
            :..|.|.|.|    .:|.|.:::..     |.:.:||.::....:.|   ..|:|...:..:...
  Rat     8 KEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAEL 72

  Fly   386 P----PVTRVSDKVLIPQEQHPDINFVGLLIGPRGNTLKAMEKDTGAKIIIRGKGSVKEGKV--- 443
            |    |:.::.:|:.:|.:::||.||||.::||||.|.|.:|.:||.||::|||||:::.|.   
  Rat    73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQ 137

  Fly   444 --GRKDGQPLPGEDEPLHAFITAPNPE-----AVRKAVDKIKDVIRQGIEVPEGHNDLRRMQLRE 501
              |:.:.:.|   :|.||..||..:.:     .:::||:::|.::   :...||.:.|::|||.|
  Rat   138 NRGKPNWEHL---NEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL---VPAAEGEDSLKKMQLME 196

  Fly   502 LAQLNGTLRENDIQRCTCGSTDHKSWQCPDKPIITNTIVCTSCGGTGHLTKDCRNKRPGSGVPGM 566
            ||.||||.|:.:|:                .|.:..::..|:......:|               
  Rat   197 LAILNGTYRDANIK----------------SPALAFSLAATAQAAPRIIT--------------- 230

  Fly   567 ACEDSQAKIDEEYMSLMAELGEGPPP--PSASAKTDPPASNGPQLHRASYSIFDKKPSQMQAIQS 629
                                  ||.|  |.|:.:|..||.                |:.|..|:.
  Rat   231 ----------------------GPAPVLPPAALRTPTPAG----------------PTIMPLIRQ 257

  Fly   630 PPSSSSRDHQRDLGGWGAAAHEHGMGMEHGMGLDQHGHGLAAMDHGMSLGMEHAMAAYVPAPPGT 694
            ..::.                                         |..|..|..||.|  |||.
  Rat   258 IQTAV-----------------------------------------MPNGTPHPTAAIV--PPGP 279

  Fly   695 QAPPPMPPPLMPWMSAPQPPPPATEPLNPPI 725
            :|.....|...|:..|     |||..|..||
  Rat   280 EAGLIYTPYEYPYTLA-----PATSILEYPI 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF1NP_524654.2 MSL5 253..512 CDD:227503 63/204 (31%)
PTZ00368 <519..>568 CDD:173561 3/48 (6%)
QkiNP_001401394.1 STAR_dimer 10..64 CDD:435414 12/53 (23%)
Qua1 domain, involved in homodimerization. /evidence=ECO:0000250|UniProtKB:Q17339 11..82 14/70 (20%)
KH-I_Hqk 81..183 CDD:411893 35/107 (33%)
Qua2 domain, involved in RNA binding. /evidence=ECO:0000250|UniProtKB:Q96PU8 182..213 15/46 (33%)
PHA03247 <211..314 CDD:223021 33/196 (17%)
SH3-binding 276..279 2/2 (100%)
Quaking_NLS 312..341 CDD:435421
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:Q9QYS9 324..330
Blue background indicates that the domain is not in the aligned region.

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