DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF1 and khdrbs1b

DIOPT Version :10

Sequence 1:NP_524654.2 Gene:SF1 / 43912 FlyBaseID:FBgn0025571 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_998400.1 Gene:khdrbs1b / 406516 ZFINID:ZDB-GENE-040426-2344 Length:352 Species:Danio rerio


Alignment Length:394 Identity:100/394 - (25%)
Similarity:151/394 - (38%) Gaps:122/394 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 QLIVKMQTVNPEF--------------------KPPADYKPPVT----RVSDKVLIPQEQHPDIN 406
            ||:.:..:::|.|                    |....|....|    ::.:::|||.:|:|..|
Zfish    10 QLLAERDSLDPSFTHAMKLISAEIEKIEKGDTEKDTESYLDLFTMKNIKLKERILIPVKQYPKFN 74

  Fly   407 FVGLLIGPRGNTLKAMEKDTGAKIIIRGKGSV----KEGKVGRKDGQP----LPGEDEPLHAFIT 463
            |||.::||:|||:|.::::|||||.:.||||:    ||.:: ||:|:|    |..|   ||.||.
Zfish    75 FVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKNKEEEL-RKNGEPKYAHLSME---LHVFIE 135

  Fly   464 --APNPEAVRK---AVDKIKDVIRQGIEVPEGHNDLRRMQLRELAQLNGTLRENDIQRCTCGSTD 523
              ||.|:|..:   |:::||..:     .|:..:|:.:.|..|:..||             |..:
Zfish   136 VFAPVPDAYMRMAHAMEEIKKFL-----FPDMMDDICQEQFMEMKFLN-------------GGQE 182

  Fly   524 HKSWQCPDKPIITNTIVCTSCGGTGHLTKDCRNK--RPGSGVP---GMACEDSQAKIDEEYMSLM 583
            |                    ||.|......|.:  .|..|.|   ||.....            
Zfish   183 H--------------------GGRGRGGPPIRGRGGLPPPGAPRGRGMPPRGG------------ 215

  Fly   584 AELGEGPPPPSASAKTDPPASNGP--QLHRASYSIFDKKPSQMQAIQSPPSSSSRDHQR------ 640
               |.|.||...:|:..|....||  ||.|.:.|...:.|:.......||..:...:..      
Zfish   216 ---GRGGPPRGGAARGAPAGRGGPSAQLPRGAASNRARPPAPGAPRMPPPPQTQESYDEYSYDES 277

  Fly   641 --DLGGWG---------AAAHEHGMGMEHGMGLDQHGHGLAAMDHGMSLGMEHAMAAYVPAPPGT 694
              |.|...         ||..|:   .::|.|..|.|:...|.|:.... ...|.||...||...
Zfish   278 YADTGYESYDSYYSQPQAAETEY---YDYGHGETQEGYENYAQDNWNGT-PRTAAAAGGKAPTQR 338

  Fly   695 QAPP 698
            |..|
Zfish   339 QTKP 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF1NP_524654.2 MSL5 253..512 CDD:227503 56/182 (31%)
PTZ00368 <519..>568 CDD:173561 11/53 (21%)
khdrbs1bNP_998400.1 Qua1 6..56 CDD:465079 7/45 (16%)
KH-I_KHDRBS1 55..160 CDD:411896 43/113 (38%)
Sam68-YY 269..318 CDD:465182 10/51 (20%)

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