DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SF1 and qkia

DIOPT Version :10

Sequence 1:NP_524654.2 Gene:SF1 / 43912 FlyBaseID:FBgn0025571 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_571299.1 Gene:qkia / 30471 ZFINID:ZDB-GENE-990415-230 Length:383 Species:Danio rerio


Alignment Length:491 Identity:104/491 - (21%)
Similarity:170/491 - (34%) Gaps:217/491 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   320 LRTGDLGITQNPEERSPSPEPIYS-SDGKRLNTR------EFRYRKR-LEEQRHQLIVKMQTVNP 376
            :..|::.:.:.|.   |||:.:.. .:.|:|.|.      .|.:.:| |:|:.::  |:....|.
Zfish     1 MMVGEMEVKERPR---PSPDYLMQLLNEKKLMTSLPNLCGIFTHLERLLDEEINR--VRKDMYND 60

  Fly   377 EFKPPADYKP--------PVTRVSDKVLIPQEQHPDINFVGLLIGPRGNTLKAMEKDTGAKIIIR 433
            ......|..|        |:..:.:|:.:|.:::||.||||.::||||.|.|.:|.:||.||::|
Zfish    61 SVNGLVDKHPLELPEPVGPIVHLQEKLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVR 125

  Fly   434 GKGSVKEGKV-----GRKDGQPLPGEDEPLHAFITAPNPEA-----VRKAVDKIKDVIRQGIEVP 488
            |:.|:::.|.     |:.:.:.|   :|.||..||..:.:.     :|:||:::|.::   :...
Zfish   126 GRSSMRDKKKEEQNRGKPNWEHL---NEDLHVLITVEDTQTRAEIKMRRAVEEVKKLL---VPAA 184

  Fly   489 EGHNDLRRMQLRELAQLNGTLRENDIQRCTCGSTDHKSWQCPDKPIITNTIVCTSCGGTGHLTKD 553
            ||.::|::|||.|||.||||.|:.:|:                                      
Zfish   185 EGEDNLKKMQLMELAILNGTYRDTNIK-------------------------------------- 211

  Fly   554 CRNKRPGSGVPGMACEDSQAKIDEEYMSLMAELGEGPPPPSASAKTDPPASNGPQLHRASYSIFD 618
                     .|.:|            .||.|          |:|     |:.||:|         
Zfish   212 ---------APTLA------------FSLAA----------AAA-----AAQGPRL--------- 231

  Fly   619 KKPSQMQAIQSPPSSSSRDHQRDLGGWGAAAHEHGMGMEHGMGLDQHGHGLAAMDHGMSLGMEHA 683
                                                                             
Zfish   232 ----------------------------------------------------------------- 231

  Fly   684 MAAYVPAPPGTQAPP----PMPPPLMPWMSAPQPPPPATEPLNPPIPGTLPPLIPPPPGTS---- 740
                :.||||...||    |..|...|.|:..:|...||     .:|...|.|:||.|...    
Zfish   232 ----IAAPPGQVLPPATLRPPTPAGTPIMNIIRPTQMAT-----VLPNGTPTLVPPTPDAGIIYT 287

  Fly   741 ---------AP------PMPPWGGGAYSGWGGGYAP 761
                     ||      |:...|......||.|.:|
Zfish   288 TPYDYPYALAPTSLLEYPIEHSGVLGKRAWGLGTSP 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF1NP_524654.2 MSL5 253..512 CDD:227503 65/217 (30%)
PTZ00368 <519..>568 CDD:173561 1/48 (2%)
qkiaNP_571299.1 STAR_dimer 11..64 CDD:435414 13/57 (23%)
KH-I_Hqk 82..184 CDD:411893 34/107 (32%)
PHA03291 <212..>306 CDD:223033 32/203 (16%)
Quaking_NLS 354..383 CDD:435421
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.