DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SF1 and bpb1

DIOPT Version :9

Sequence 1:NP_524654.2 Gene:SF1 / 43912 FlyBaseID:FBgn0025571 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_587871.1 Gene:bpb1 / 2538832 PomBaseID:SPCC962.06c Length:587 Species:Schizosaccharomyces pombe


Alignment Length:601 Identity:218/601 - (36%)
Similarity:299/601 - (49%) Gaps:119/601 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 GREQRFD-LTQTIQELMGNAGGNKGFASFFNSQNSNDSTSNGAFDNSADSAAERKRKRKSRWGGS 281
            || :||| ...::..|....|.:.|:...:.|.:..|...:|..|...     |:..||..||..
pombe    18 GR-RRFDEKPDSLPPLPDANGMSNGYRDSYKSNSRMDHRPDGYHDGRG-----RRAYRKHYWGHP 76

  Fly   282 ENDKTFIPG---MPTILPSTLDPAQQEAYLVQFQIEEISRKLRTGDLGITQNPEERSPSPEPIYS 343
            ...:..:|.   :.|.:.|.:...|.|.|.:..::|||::||||||  :..:..||||||.|.|.
pombe    77 TPIEEMLPSQMELETAVKSCMTMEQLELYSLNVRLEEITQKLRTGD--VVPHHRERSPSPPPQYD 139

  Fly   344 SDGKRLNTREFRYRKRLEEQRHQLIVKMQTVNPEFKPPADYKPPVTRVSDKVLIPQEQHPDINFV 408
            :.|:||||||.||:|:||::||::|.:...:.|.|:.|:||:.| .:..:||.:|.:.:|:|||:
pombe   140 NHGRRLNTREIRYKKKLEDERHRIIERAMKMVPGFRAPSDYRRP-AKTQEKVYVPVKDYPEINFI 203

  Fly   409 GLLIGPRGNTLKAMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGEDEPLHAFITAPNPEAVRKA 473
            ||||||||:|||.||..:||||.||||||||||| ||.|.......:|.||..:||.:.:.:..|
pombe   204 GLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGK-GRSDPSVRGNMEEDLHCLVTADSEDKINHA 267

  Fly   474 VDKIKDVIRQGIEVPEGHNDLRRMQLRELAQLNGTLRENDIQRC-TCGSTDHKSWQCPDKPIITN 537
            :..|.:||:....||||.|||:|.|||:||.||||||:::.|.| .||:..|:.:.||::...|.
pombe   268 IKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRDDENQVCQNCGNVGHRRFDCPERINHTM 332

  Fly   538 TIVCTSCGGTGHLTKDC--RNKRPGSGVPGMACEDSQAKIDEEYMSLMAELGEGPPPPSASAKTD 600
            .|||..||..||:.:||  |:::     |.||  ||.|  |.||.|||.|||.|      ||   
pombe   333 NIVCRHCGSIGHIARDCPVRDQQ-----PPMA--DSTA--DREYQSLMQELGGG------SA--- 379

  Fly   601 PPASNGPQLHRASYSIFDKKPSQMQAIQSPPSSSSRDHQRDLGGWGAAAHEHGMGMEHGMGLDQH 665
              .|||....:.|....:...:..||...||             |.||                 
pombe   380 --ISNGNGEPQKSIEFSESGAASPQAGHPPP-------------WAAA----------------- 412

  Fly   666 GHGLAAMDHGMSLGMEHAMAAYVP-APPGTQAPPPMPPPLMPWMSAPQPPPPATEPLNPPIPGTL 729
                       |..:..:.::..| |.|.:.|.|..|   .||.   ||..|.:.|.....|.:|
pombe   413 -----------STSVSSSTSSPAPWAKPASSAAPSNP---APWQ---QPAAPQSAPALSMNPSSL 460

  Fly   730 PP--------------LIPPP-----PGTSAPPMPPWGGGAYSGWGGGYAPP----PPPPCAPPP 771
            ||              |:|..     ||||| |:||          ..:|||    ||.|.||..
pombe   461 PPWQQPTQQSAVQPSNLVPSQNAPFIPGTSA-PLPP----------TTFAPPGVPLPPIPGAPGM 514

  Fly   772 PALSLSQPPPPPPPSA 787
            |.|::||||..||..|
pombe   515 PNLNMSQPPMVPPGMA 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF1NP_524654.2 MSL5 253..512 CDD:227503 118/261 (45%)
SF1-HH 274..385 CDD:292892 46/113 (41%)
SF1_like-KH 392..510 CDD:239088 64/117 (55%)
bpb1NP_587871.1 MSL5 17..306 CDD:227503 127/297 (43%)
SF1-HH 69..181 CDD:292892 46/113 (41%)
SF1_like-KH 187..304 CDD:239088 64/117 (55%)
AIR1 269..400 CDD:227414 62/150 (41%)
zf-CCHC 309..326 CDD:278525 6/16 (38%)
zf-CCHC 334..350 CDD:278525 8/15 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 94 1.000 Domainoid score I1973
eggNOG 1 0.900 - - E1_COG5176
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 300 1.000 Inparanoid score I605
OMA 1 1.010 - - QHG52021
OrthoFinder 1 1.000 - - FOG0003999
OrthoInspector 1 1.000 - - oto100431
orthoMCL 1 0.900 - - OOG6_102013
Panther 1 1.100 - - LDO PTHR11208
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R128
SonicParanoid 1 1.000 - - X2762
TreeFam 1 0.960 - -
1312.860

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