DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SF1 and Khdrbs1

DIOPT Version :9

Sequence 1:NP_524654.2 Gene:SF1 / 43912 FlyBaseID:FBgn0025571 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_035447.3 Gene:Khdrbs1 / 20218 MGIID:893579 Length:443 Species:Mus musculus


Alignment Length:447 Identity:107/447 - (23%)
Similarity:170/447 - (38%) Gaps:120/447 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 DKTFIPGMPT-ILPSTLDPA----QQEAYLVQFQIEEISRKLRTGDLGITQNPEERSPSPEPIYS 343
            |.|.:...|| :||.:...|    .:..||.:...|:.|.     |...|...:..|...|.|..
Mouse    75 DATVVGSAPTPLLPPSATAAVKMEPENKYLPELMAEKDSL-----DPSFTHAMQLLSVEIEKIQK 134

  Fly   344 SDGKRLNTREFRYRKRLEEQRHQLIVKMQTVNPEFKPPADYKPPVTRVSDKVLIPQEQHPDINFV 408
            .:.|:.:...:     |:...|:.:                     ::.::||||.:|:|..|||
Mouse   135 GESKKDDEENY-----LDLFSHKNM---------------------KLKERVLIPVKQYPKFNFV 173

  Fly   409 GLLIGPRGNTLKAMEKDTGAKIIIRGKGSV----KEGKVGRKDGQPLPGE-DEPLHAFITAPNP- 467
            |.::||:|||:|.::::|||||.:.||||:    ||.:: ||.|.|.... :..||.||....| 
Mouse   174 GKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEEL-RKGGDPKYAHLNMDLHVFIEVFGPP 237

  Fly   468 -EA---VRKAVDKIKDVIRQGIEVPEGHNDLRRMQLRELAQLNGTLRENDIQRCTCGSTDHKSWQ 528
             ||   :..|::::|..:     ||:..:|:.:.|..||:.|||.   .:..|....|...:...
Mouse   238 CEAYALMAHAMEEVKKFL-----VPDMMDDICQEQFLELSYLNGV---PEPSRGRGVSVRGRGAA 294

  Fly   529 CPDKPIITNTIVCTSCG----GT---GHLTKDCRNKRPGSGVPGMACEDSQAKIDEEYMSLMAEL 586
            .|..|:.....|....|    ||   |.:|:.....|   ||                       
Mouse   295 PPPPPVPRGRGVGPPRGALVRGTPVRGSITRGATVTR---GV----------------------- 333

  Fly   587 GEGPPPPSASAKTDPPASNGPQLHRASYSIFDKKPSQMQAIQSPPSSSSRDHQRDLGGWGAAAHE 651
               ||||:......|.|                :.:.:|.|..||:.:...:: |.|.....|.:
Mouse   334 ---PPPPTVRGAPTPRA----------------RTAGIQRIPLPPTPAPETYE-DYGYDDTYAEQ 378

  Fly   652 HGMGMEHGMGLDQ-------HGHGLAAMDHGMSLGMEHAMAAYVPAPPGTQAPPPMP 701
            ...|.|......|       :||| ...|...:.|.:.    :....|..:|||..|
Mouse   379 SYEGYEGYYSQSQGESEYYDYGHG-ELQDSYEAYGQDD----WNGTRPSLKAPPARP 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF1NP_524654.2 MSL5 253..512 CDD:227503 68/242 (28%)
SF1-HH 274..385 CDD:292892 19/105 (18%)
SF1_like-KH 392..510 CDD:239088 49/127 (39%)
Khdrbs1NP_035447.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..94 6/18 (33%)
Involved in homodimerization. /evidence=ECO:0000250|UniProtKB:Q07666 100..260 54/196 (28%)
Qua1 103..153 CDD:318503 12/59 (20%)
SF1_like-KH 157..276 CDD:239088 47/124 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..317 6/36 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 326..345 7/47 (15%)
Interaction with HNRNPA1. /evidence=ECO:0000250|UniProtKB:Q07666 351..443 20/86 (23%)
Sam68-YY 366..415 CDD:318716 11/50 (22%)
Interaction with ZBTB7A. /evidence=ECO:0000250|UniProtKB:Q07666 400..420 5/24 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..443 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5176
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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