DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SF1 and asd-2

DIOPT Version :9

Sequence 1:NP_524654.2 Gene:SF1 / 43912 FlyBaseID:FBgn0025571 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001250340.1 Gene:asd-2 / 188703 WormBaseID:WBGene00006423 Length:486 Species:Caenorhabditis elegans


Alignment Length:497 Identity:122/497 - (24%)
Similarity:207/497 - (41%) Gaps:116/497 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 NSNDSTSNGAFDNSADSAAERKRKRKSRWGGSENDKTFIPGMPTIL--PSTLDPAQQEAYLVQFQ 312
            :|:.:||:.:...:|.::|                    |..||:|  |.:|......|      
 Worm    38 SSSSTTSSESHVTTASTSA--------------------PQSPTLLAPPISLQDVMTHA------ 76

  Fly   313 IEEISRKLRTGDLGITQNPEER--SPSPEPIYSS--------DGKRLNT--REFRYRKRLEEQRH 365
                     :.|| :|.|....  |.|.:..||:        |.|:|..  ..|.:.:||.::. 
 Worm    77 ---------STDL-LTPNGSANGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEE- 130

  Fly   366 QLIVKMQTV------NPEFKPPADYKPPVTRVSDKVLIPQEQHPDINFVGLLIGPRGNTLKAMEK 424
              |.|::.|      :.|..|..|.:...|..::||.:|.::|||.||||.::||||.|.|.:|:
 Worm   131 --INKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQ 193

  Fly   425 DTGAKIIIRGKGSVKEGKV-----GRKDGQPLPGEDEPLHAFITAPNPE-----AVRKAVDKIKD 479
            :||.||::||:||:::.|.     |:.:.:.|   .|.||..|...:.|     .:.:||::::.
 Worm   194 ETGCKIMVRGRGSMRDKKKEELNRGKPNWEHL---SEELHVLIQCEDTENRAKVKLMRAVEEVRK 255

  Fly   480 VIRQGIEVPEGHNDLRRMQLRELAQLNGTLR----ENDIQRCTCGSTDHK-----------SWQC 529
            ::   :..|||.:||:|.||.|||.:|||.|    ::.:......:..|:           :.|.
 Worm   256 LL---VPAPEGEDDLKRKQLMELAIINGTYRSGTDQSALAAAQLAAVKHQQQPFAAALQAAALQR 317

  Fly   530 PDKPIITNTI----VCTSCGGTGHLTKDCRNKRPGSGVPGMACEDSQAKIDEEYMSLM--AELGE 588
            ...|::.|.:    ....||....::...|....|      |...|||.:..:..|.:  |..|.
 Worm   318 GVLPMMANGLSRSPTMAVCGAPIVMSPSGRASSAG------ATATSQAALIMQQQSQLHAANAGN 376

  Fly   589 GPPPPSASAKTDPPASNGPQLHRASYSIFDKKPSQMQ--AI--QSPPSSSSRDHQRDLGGWGAAA 649
            ......|:......|:...||..:...::|....|.|  |:  .:..:::....|...|...|||
 Worm   377 AALQQQAALLQQQQAAEYQQLLLSQAGLYDFSAMQQQYAAVGQNAAVAAAQAQAQAQYGALAAAA 441

  Fly   650 HEHGMGMEH-----GMGL--DQHGHGLAAMDHGMSLG--MEH 682
            ..:..|.:.     |:.|  .|..|| |.:::...||  .||
 Worm   442 AANSAGNQQYADYAGVDLTSQQSAHG-AMLNNRRLLGASREH 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF1NP_524654.2 MSL5 253..512 CDD:227503 82/292 (28%)
SF1-HH 274..385 CDD:292892 27/130 (21%)
SF1_like-KH 392..510 CDD:239088 49/127 (39%)
asd-2NP_001250340.1 STAR_dimer 95..145 CDD:374616 11/52 (21%)
SF1_like-KH 161..283 CDD:239088 49/127 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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