Sequence 1: | NP_730591.2 | Gene: | skd / 43906 | FlyBaseID: | FBgn0003415 | Length: | 2768 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038941974.1 | Gene: | Med13 / 303403 | RGDID: | 1304829 | Length: | 2171 | Species: | Rattus norvegicus |
Alignment Length: | 2921 | Identity: | 793/2921 - (27%) |
---|---|---|---|
Similarity: | 1183/2921 - (40%) | Gaps: | 930/2921 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 TNGASLEDCHTNFYALTDLCGIKWRKFVNGERPNASSDPL------ADPILRSYSRCIQADMLCV 66
Fly 67 WRRVQSTKTDHADPNALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELLRVAANQ 131
Fly 132 ALWNGTWKGALTYECRSLLFKALHNLMERFVLTKDIVRFGKWFVQPCTSSDRLFGRSSQHLSFSF 196
Fly 197 TFFVHGDT-VCASIDLREHPAVRPLTKEHLTEAAAAFAAASSPPGSNGSAASAGGAVPNPGQDPN 260
Fly 261 GASMDGLDGGEGAAKAAPPPHARKVMLAPFGIAGILTGNSYKASDPIAEKILEDWASFFPL-C-- 322
Fly 323 -------NKD---NTDVPPVVEVVSGGHKMYHPTNYVLVTDLDDMEHMEFVEMQKMQSSVAGAAA 377
Fly 378 ESAVLASLSCPPGAASAPSSMGAAPSATAVPLG----PASLNAPALAGAGVGATASSAAKEISRK 438
Fly 439 AAPQAVSALERLAFQPYYDQRPTSGFTFNTNNTH---IPASAAVEMPERTWQDCVMNTLHVDA-- 498
Fly 499 AAAAAAVASSTPASGTGSLSADGDENEQNKPPQDSKQLVQQQIQQQQQRQKLWNFVDPMQKAPCI 563
Fly 564 CTNAQCNSSSSISNISNNKRPQQPLGSPALRAAVTGGSGNKSSSSSSSSSSSSSSSSSYQQQ--- 625
Fly 626 -H--YHQQHLQQQQQQRPGTPVLPATAATSSHHSSSLSNTSASNSSAATPRRHNVPFHKRLLHSL 687
Fly 688 ASTASSTASTFRAKNHSNTTTDTNIPKQRHLGNTP--HGTPHGGASTYSRNSLGGDSSMPVASVE 750
Fly 751 SPATPAPSPHPNSAHSQPTSVPPAEQLLNMSPHAPTSVSNLQQPPTPIDHLLDKNTPAPTPTDQH 815
Fly 816 DSKSITASPYVHQTPSVEPPSYTDHAAGGGPAGGQGLGTGPGSVPAQQPATPTAATSAGGAGSGG 880
Fly 881 PSNAIGANAVGTISVKKLEMQ---QQTPSAAMAIKQEP-GAQGRGVGGVTSTTEALNNFKRLYNP 941
Fly 942 PKLTLKDPDSFYDEEWLKEVIYDFQYQEYWDYSTVKRPKMEKQRRPRYAKNLYEGQNHVKPVMPS 1006
Fly 1007 PGSVYGSQLLSLDESASQAGGRGGGGQAAGSSGGGLVGIANSTASGSDVEADGSSFFQGLNIKTE 1071
Fly 1072 PGLHSPSCKETSKSSGGNSSGGGSGSGGNLFTAEGLNPSLNDLEQLFETSSNDECSSVQIHTPPD 1136
Fly 1137 SNNPSNGGCSAVTNTIEDLKRSTAVASAAVAAAAAAAASGAGN------IQAEDLTKMFPTPPSH 1195
Fly 1196 EQQHPNSSPCQTDVVMTDLSVDTTTTIITSSITTTCNTTITSSINTTTTACSNPSNSIMLAAAQA 1260
Fly 1261 PVTVVAIQTVSKMVKQEYNLELG--SPMEEPINDWDYVYRPPQQEKFVGSTRYAPLTNLPSQTQP 1323
Fly 1324 PLTLPTGCFYQPTWSSHKSRAATLAKAAAAQQQQHQKHQALQQRIQLHQQKLQQLQLQNQQQQQA 1388
Fly 1389 AAAAAAAASGGVGHQKHQHQHLHDLLSAAPRTPLTPSTVPQPLSSG-GSQYLLNQLNCPQAPPGA 1452
Fly 1453 SMQQLMHRAGMSPISPGPGMGPYAARSSPMSRATPTHPPPPYPYDLAVASPATSTSSYLNRPLHS 1517
Fly 1518 QEHPHMHGLGGGATGVVGHGTGGGGHMGMVAYTGD-----AGIVSGGTAMAAGSSSLLQELPEVN 1577
Fly 1578 SVLVNILLYDTALNVFRDHNFDSSSVCVCNADTQKIGNIRGADSGVYVPLPGVSFNPFPSGAGGA 1642
Fly 1643 LAGQRMLNGPSSAGFGGMRMISAFGGSPASASMPGAGSGHGHGPNGGSNSSSCTPPSSNPHITGY 1707
Fly 1708 VDDDPVECTCGFSAVVNRRLSHRAGLFYEDEVEITGIADDPGRNKQPTLLSIIQSLSRKNQNKQG 1772
Fly 1773 PGETSSALDKIGAGGLPNGQL---EQLGHAVFDLLLDQCSIIQTSSSSVHRALQSHRRRMSRQRR 1834
Fly 1835 IFGNNGA------PTASLASIANVLEFMDAHDVISLALEQSRLAFENQRMDNMMDFHGNGSSSSH 1893
Fly 1894 QQQQLTAFHAPPPALRHKLAGIGAGRLTVHKWPYLPVGFTRSNKEIVRTMNAIQPMLQNAFHCKS 1958
Fly 1959 RGGSGSKDASSYNTVSGPLTWRQFHRLAGRAS----GQCEPQPIPSVVVGYEKDWISVAPHSIHY 2019
Fly 2020 WDKFLLEPYSYARDVVYVVVCPDNEHVVNCTRSYFRELSSTYEMCKLGKHTPIRG--WDGFLQVG 2082
Fly 2083 AARNNVPADRETTPLDDWLRTLEHAA-----LAEQIRRYAVAFIHQLAPYLSRVPNDKTLLNPPD 2142
Fly 2143 ----------------GSGNSHSKGGSSCSSNSSSVSGLPG----GDLPTDNIKLEPGTEPQVQP 2187
Fly 2188 M----ETNEIKQEPGVGKGGT-------AAGETKPTLILG------------------------- 2216
Fly 2217 ---------DPLGM---GETLEDINPSAIVLYVVNPFTFAS--DSCELERLALIALLRCYAELLK 2267
Fly 2268 AVPDSVRSQMNIQIISLESVMELGPCGNRKRFSDEIRCLALNIFSQCRRHLVHAQSVKSLTGFGT 2332
Fly 2333 AANMEAFLKTKDEPNRRAYKMYTAPFVLAPMHERNDKTDFSRSAGSMHGQNEHRYSVMYCNYCLS 2397
Fly 2398 EDQAWLLATATDERGEMLEKICINIDVPNRARRRKAPARYVALKKLMDFIMGIISQTSQMWRLVI 2462
Fly 2463 GRIGRIGHSELKSWSFLLSKQQLQKASKQFKDMCKQCTLMY--PPTILSACLVTLEPDAKLRVMP 2525
Fly 2526 DQFTPDERFSQ---ISMQNP-LATPQDVTCTHILVFPTSAVCAPFTRQFQNEPQVDDDFLTFEEE 2586
Fly 2587 GNEDFSDA-------DIGDLFWDTHMDRV---------SNHGSPGRMDDNRSWQSAGGNNFKCTP 2635
Fly 2636 PQEVEEVGSLNQQPISVGYMVSTAPTGRMPAWFWSACPHLEDVCPVFLKTALHLHVPSIQSADDI 2700
Fly 2701 LNSTNAHQSGNDHPLDSNLTADVLRFVLEGYNALSWLALDSNTHDRLSCLPINVQTLMDLY 2761 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
skd | NP_730591.2 | Med13_N | 15..490 | CDD:288451 | 149/501 (30%) |
Med13_C | 2234..2755 | CDD:283892 | 229/544 (42%) | ||
Med13 | XP_038941974.1 | Med13_N | 9..286 | CDD:402956 | 123/397 (31%) |
MID_MedPIWI | 1366..1721 | CDD:408105 | 92/360 (26%) | ||
Med13_C | 1757..2160 | CDD:399381 | 190/424 (45%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166342668 | |
Domainoid | 1 | 1.000 | 332 | 1.000 | Domainoid score | I1102 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3600 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H21067 | |
Inparanoid | 1 | 1.050 | 898 | 1.000 | Inparanoid score | I365 |
OMA | 1 | 1.010 | - | - | QHG46046 | |
OrthoDB | 1 | 1.010 | - | - | D177884at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002706 | |
OrthoInspector | 1 | 1.000 | - | - | otm45333 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_104038 | |
Panther | 1 | 1.100 | - | - | O | PTHR48249 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X2492 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
15 | 14.860 |