DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment syd and unc-16

DIOPT Version :9

Sequence 1:NP_524652.1 Gene:syd / 43905 FlyBaseID:FBgn0024187 Length:1227 Species:Drosophila melanogaster
Sequence 2:NP_001255008.1 Gene:unc-16 / 176349 WormBaseID:WBGene00006755 Length:1190 Species:Caenorhabditis elegans


Alignment Length:1298 Identity:492/1298 - (37%)
Similarity:695/1298 - (53%) Gaps:227/1298 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GGPQSGAETVYGTEDNNMVMSEKNEQVVSIVQQLAGSIYQEFERMINRYDEDVVKNLMPLLVNVL 76
            |||        |:.|.:..||:|       ||.:|.:||:|.|.||..:.||.||.||||:||||
 Worm    26 GGP--------GSPDEHRTMSDK-------VQTMASAIYRELETMIKVHGEDGVKTLMPLVVNVL 75

  Fly    77 ECLDASYRINQEQDVEVELLREDNEQLVTQYEREKSARKQSEQKLLEAEDLAEQENKELATRLES 141
            |.||.:|....||..|:|:|:||||||.|||||||:.|||:|||.:|.||....:||||..::||
 Worm    76 EALDLAYLERDEQTAELEMLKEDNEQLQTQYEREKALRKQTEQKYIEIEDTLIGQNKELDKKIES 140

  Fly   142 VESIVRMLELKHKNSLEHASRLEEREADLKKEYNKLHERYTELFKNHVDYMERTKMLMGSTHSQM 206
            :|||:||||||.||:.:|||||||||.:.|.|:::|||||..|.:.|||:|||||.||||...::
 Worm   141 LESIMRMLELKAKNATDHASRLEEREVEQKLEFDRLHERYNTLLRTHVDHMERTKYLMGSEKFEL 205

  Fly   207 STASERMDVSRARL-NPVARSSGPVSYGFASLENSVMLDTETICSVGSQSDDSGPPSLQNEL--- 267
               .:.|.:...:| |.:..:        ||::.|.:.....:.|.......:...:|.|.:   
 Worm   206 ---MQNMPLPNMQLRNKMGMA--------ASVDASSIRGVSDLISAHMTQSTTMDVNLANHITNE 259

  Fly   268 ---DNLSGTLERG------AATDALQQQHHATSPQSPDSSPVVPNVPTNVGRSTTKKEQRSDNNL 323
               |..|..:|..      ::.|||             :||:....||....:.:.|:...    
 Worm   260 DWQDEFSSDIEPSPRDIPQSSADAL-------------TSPITTKEPTPKREAASPKQSEE---- 307

  Fly   324 YQELSFQDNEESEENEIVTGS--------W---------VHPGEYA---SSANDNYFGMGKEVEN 368
             :|.....:.:.:||..:.|:        |         ..|.|..   .:::|...|||:||||
 Worm   308 -EEADETTSVDPKENNDLLGADLTDDESDWNGLGLIPRRHRPNEMLDDDDTSDDGSLGMGREVEN 371

  Fly   369 LIMENNELLATKNALNIVKDDLIVKVDELTGEVEIVREELNAMQQSRTKLRQRISELEDELKKAK 433
            ||.||:|||..||||||||:|||.:||||..|..|:|:|..:.|....|::::|::.|:|:|..|
 Worm   372 LIKENSELLDMKNALNIVKNDLINQVDELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLK 436

  Fly   434 EQVKQQNTEQEENDVPLAQRKRFTRVEMAMVLMERNQYKERLMELQEAVRLTEILRASR---TVD 495
            :::.::..||||:|||:|.||||||.||..|||:||.|||:||||:|:::.||:.||.:   ...
 Worm   437 QKLMEKENEQEEDDVPMAMRKRFTRSEMQRVLMDRNAYKEKLMELEESIKWTEMQRAKKMQQQQQ 501

  Fly   496 NLDRKSKQSIWKYFSNLFTPSNRPTERVADGLGGGPMFRHTGGGSPAHSHGSPSRGSGGGDNRLA 560
            |:::|....||::||:|...|..|                     ||.|.|:.:..|.|     .
 Worm   502 NVNQKKSGGIWEFFSSLLGDSVTP---------------------PASSRGNRASSSRG-----K 540

  Fly   561 LTSGQPPVHPASAGLANALIMPKDYAEEGSSERISARRREQYRQLRAHVQKEDGRLHAYGWSLPI 625
            :|.....:.|                 :..|||.:|.|||||:.:|.||:|||||:.||||||| 
 Worm   541 MTRSVEYIDP-----------------DMISERRAAERREQYKLVREHVKKEDGRIEAYGWSLP- 587

  Fly   626 NKASQEANPNRHSGGVPVPVYCNPLAEASPHMKVFCAAGVNLHGGFTKNGQSLIPANSPYAPKST 690
                   |.......||:||.|.||.:..|.:|::||.||.|.||..:.||.::.....:||.|.
 Worm   588 -------NVEAEVSSVPIPVCCRPLLDNEPSLKIWCATGVVLRGGRDERGQWIVGDPIYFAPASM 645

  Fly   691 LKIAEITSPTADQSMEALDRQMARVSLETLEPET---QLSSFVWICTSTHAASTVSVVDANQSAT 752
            .|     :.|::...|..|......:|:..|.|.   |.||.||:.:|....|.::|:|||....
 Worm   646 KK-----TKTSNHRPELEDEIKRARNLDARESELDEWQSSSLVWVVSSNQGKSLIAVLDANNPNN 705

  Fly   753 VLDAFPICASHLLCIASVQGAMESDYALLEQSE---VVKAGEMLQRPG--EGTELLGKVEFVRVK 812
            :::.||.|.||||||.:|.|.||.:..:.|:..   :...|::...|.  :||: ||..|:|   
 Worm   706 IIETFPACDSHLLCIQAVSGVMEGEPEMNEEQSKKYLSGGGKIKDLPEGLDGTD-LGACEWV--- 766

  Fly   813 PKSDDEQNSNEKQQQEEEEAKEATEKSNEQLP--------AVSAEEPLGNVEAIKIRQPLPGAPQ 869
                      |.::.|:.|....|..||:..|        ::|...|:.:...:| ..|||....
 Worm   767 ----------ELRKMEDSEDGVPTYCSNDMKPSPKRTRDFSISEVAPVDSSAPVK-EDPLPPPAN 820

  Fly   870 RLSTDGNQTNNNNNSSSSSNLLFATKSLNP----ILETKDRDEPAMSSVGPTMWLGAQDGWLYVH 930
            |   .|.:.                 :|.|    .:...|.....||...||:|:|.|:.::|:|
 Worm   821 R---PGGRA-----------------ALPPHIRDAMSKYDGVSGQMSGALPTVWMGGQNQYIYIH 865

  Fly   931 SSVGRWHECLHRVLLPDAVLAIVHVEARVVVALANAQLAVFRRQTDGQWDLNSYHLVTLGDRNHS 995
            |:|..|.:||.|:.:|||||:|||.::|:..||||..:|:|.|...|:|....||.:.:|....|
 Worm   866 SAVTAWKQCLRRIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKHGEWSDEGYHSLRVGSATSS 930

  Fly   996 IRCLCVAGERIWAAHRNKIFIVDPVSLNIVHSLDAHPRKESQVRQMAATGAGVWVSIRLDSTLRL 1060
            :|.||:....|||.::|.:.::|..||.||....|||||:||||.|...|||||:||||||||||
 Worm   931 VRSLCLVSTNIWATYKNCVVVLDAESLQIVKVFAAHPRKDSQVRNMQWVGAGVWLSIRLDSTLRL 995

  Fly  1061 YNTHTFEHKQDVDIEPYVSKMLGTGKLGFSFVRITALMVSCNRLWIGTSNGVIISVPLA-----E 1120
            |:.||:||.|||||||||:|||||.||.||::|.|||:||..||||||..|||||||.:     :
 Worm   996 YHAHTYEHLQDVDIEPYVTKMLGTSKLDFSYMRTTALLVSNRRLWIGTGTGVIISVPFSGQLEKK 1060

  Fly  1121 VQPKSSSDPHGQ------------------------MPLCCMANAQLSFHGHRDAVKFFVSVPML 1161
            ::.|.|..|.|.                        :|.|.:|:||||||||:|:||||:.||..
 Worm  1061 IETKDSKRPAGPGGLVRVYGATSENATNDEKTNDDFIPYCNLAHAQLSFHGHKDSVKFFLGVPGA 1125

  Fly  1162 QQPNLNGGLTFTNKRPDMLVMCGGEGYIDFRINDNDMENSIQLEPNQTIENRGDKSYLIVWHV 1224
            .:...:.....|.:|  ||:|.||:|||||||.:   ||..:| ..|:|..| |.|:||:|.|
 Worm  1126 SKNGEDESAEVTLRR--MLIMSGGDGYIDFRIGE---ENEPEL-TGQSIRPR-DMSHLIIWEV 1181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sydNP_524652.1 Jnk-SapK_ap_N 43..196 CDD:286787 91/152 (60%)
JIP_LZII 362..430 CDD:293080 37/67 (55%)
Vps53_N 374..>524 CDD:282020 71/152 (47%)
unc-16NP_001255008.1 Jnk-SapK_ap_N 42..195 CDD:370653 91/152 (60%)
Smc <75..>486 CDD:224117 175/439 (40%)
JIP_LZII 365..433 CDD:374561 37/67 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166781
Domainoid 1 1.000 504 1.000 Domainoid score I169
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2954
Inparanoid 1 1.050 755 1.000 Inparanoid score I284
Isobase 1 0.950 - 0.917438 Normalized mean entropy S4832
OMA 1 1.010 - - QHG49339
OrthoDB 1 1.010 - - D165438at33208
OrthoFinder 1 1.000 - - FOG0004823
OrthoInspector 1 1.000 - - oto19511
orthoMCL 1 0.900 - - OOG6_104719
Panther 1 1.100 - - LDO PTHR13886
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4614
SonicParanoid 1 1.000 - - X2032
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.890

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