DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment syd and spag9b

DIOPT Version :9

Sequence 1:NP_524652.1 Gene:syd / 43905 FlyBaseID:FBgn0024187 Length:1227 Species:Drosophila melanogaster
Sequence 2:XP_021336136.1 Gene:spag9b / 100333761 ZFINID:ZDB-GENE-110414-2 Length:1315 Species:Danio rerio


Alignment Length:1433 Identity:569/1433 - (39%)
Similarity:767/1433 - (53%) Gaps:333/1433 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MDNDDALLNNGGPQSGAETVYGTEDNNMVMSEKNEQVVSIVQQLAGSIYQEFERMINRYDEDVVK 66
            |:.:|.:|....|.|.|           :|||:       |..||.|||:||||||.||||||||
Zfish     1 MELEDGVLYQEDPGSSA-----------MMSER-------VSGLASSIYREFERMIGRYDEDVVK 47

  Fly    67 NLMPLLVNVLECLDASYRINQEQDVEVELLREDNEQLVTQYEREKSARKQSEQKLLEAEDLAEQE 131
            .||||:|.|||.||:.:..|||.:||:|||:||||||||||||||:.||.:|::.:|.||..||:
Zfish    48 ELMPLVVAVLENLDSVFAENQEHEVELELLKEDNEQLVTQYEREKALRKNAEERYIEYEDSQEQD 112

  Fly   132 NKELATRLESVESIVRMLELKHKNSLEHASRLEEREADLKKEYNKLHERYTELFKNHVDYMERTK 196
            .|.|.||::.:|:..|.:|.|.||..:...|||||||:||||||.||:|:||:..::::::||:|
Zfish   113 KKALQTRVQLLEAQTRQMEFKTKNCTDQIGRLEEREAELKKEYNALHQRHTEMIHSYMEHLERSK 177

  Fly   197 MLMGSTHSQMSTASERMDVSRARLNPVARSSGPVSYGFASLENSVML--DTETICSVGSQS---- 255
            .     ..|||..:|....||      .|...|||.|..||..|.::  |.....|.||.:    
Zfish   178 Y-----QQQMSETTETSHQSR------IRKERPVSLGIFSLPGSDVMSPDVHRDESPGSDTWRYN 231

  Fly   256 ------------------------DDSGPPSLQNELDNLSGTLERGAATDALQQQHHA------- 289
                                    :.|...|.|:||..|.|    |....:.:...||       
Zfish   232 NLSHPRSNTSLKLEAEGKSRLENLESSWSVSSQDELSGLGG----GECKSSTESASHAVPEETEG 292

  Fly   290 ------TSPQSPDSSPVV---------------------------------PNVPTNV----GRS 311
                  :|...||||..:                                 |.:..::    |.|
Zfish   293 LNPNLDSSSNKPDSSKNIGVQGDAASETQATGADQGVNGERSEVQAIIESTPELDMDLSGCKGSS 357

  Fly   312 TTKKE------QRSDNNLYQELSFQDNEESEENEIVTGSWVHPGEYASSANDNYFGMGKEVENLI 370
            |..|.      .|:.::|::|||      |..|:::       |:....|  :..|||:|||:||
Zfish   358 TPTKGIENMAFDRNTDSLFEELS------SAGNDLI-------GDVDEGA--DLLGMGREVEHLI 407

  Fly   371 MENNELLATKNALNIVKDDLIVKVDELTGEVEIVREELNAMQQSRTKLRQRISELEDELKKAK-- 433
            .||.:||.||||||:||:|||.:||||..|.::::.|:..::|::.||.:|..||||||||.:  
Zfish   408 HENTQLLETKNALNVVKNDLIARVDELVCEKDVLQGEIEVLKQTKDKLEERNKELEDELKKVRAE 472

  Fly   434 -EQVKQQNTEQEENDVPLAQRKRFTRVEMAMVLMERNQYKERLMELQEAVRLTEILRASRTVDNL 497
             |:.|.:....:::|||.||||||||||||.||||||||||||||||||||.||::|||:....|
Zfish   473 MEETKVETKGDDDSDVPTAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASKENPAL 537

  Fly   498 DRKSKQSIWKY-FSNLFTPSNRPTERVADGLGGGPMFRHTGGG-----SPAH-SHGSPSRGSGGG 555
            ..|.|.|||:. ||.||:.|                   :||.     :|.: .:.:||      
Zfish   538 SEKKKSSIWQLSFSRLFSSS-------------------SGGAAKKPEAPVNMKYNAPS------ 577

  Fly   556 DNRLALTSGQPPVHPASAGLANALIMPKDYA-------EEGSSERISARR---REQYRQLRAHVQ 610
                  :...|.|...|:.||.   :|.|.:       ||...|.:.:||   |.||||::||||
Zfish   578 ------SHVVPSVKKRSSTLAQ---LPSDKSKAFDFLNEEAEVETVVSRREQKRAQYRQVKAHVQ 633

  Fly   611 KEDGRLHAYGWSLPIN-KASQEANPNRHSGGVPVPVYCNPLAEASPHMKVFCAAGVNLHGGFTKN 674
            |||||:.|||||||.. |.:.....:.....:|||||..||.|....||::|||||||.||.|::
Zfish   634 KEDGRMQAYGWSLPPKYKVANGGQADSKIKNLPVPVYLRPLDEKDASMKLWCAAGVNLSGGKTRD 698

  Fly   675 GQSLIPANSPYAPKSTLKIAEITSPTADQSMEALDR--QMARVSLETLEPETQLSSFVWICTSTH 737
            |.|::.|:..|...|..:...|::.....|..:|||  :..:...:.|..:.:|||.|||||:||
Zfish   699 GGSIVGASVFYKDVSGGERVPISTGKKSGSQSSLDRLEEELKDQEKELRHQDELSSLVWICTTTH 763

  Fly   738 AASTVSVVDANQSATVLDAFPICASHLLCI--------------ASVQGAMESDYALLEQSEVVK 788
            ::|.|.|:||||...:|.   :|....:|:              ..:.||.|:||...|.     
Zfish   764 SSSKVLVIDANQPGNILG---LCICDCVCVQMCVHACVNFLCVCVCLSGACETDYPAGEY----- 820

  Fly   789 AGEMLQRPGE--------------GTELLGKVEFVRV-----------------KPKSDDEQNSN 822
            ||..:|...|              |::  |.:|.:.|                 .|.||:..:: 
Zfish   821 AGSEVQGGAEEPSSVRCSAGSFSAGSD--GGLEGISVVGCSADIPHTVCTNSTHTPDSDEVVSA- 882

  Fly   823 EKQQQEE-----EEAKEATEKS-----NEQLPAVSAE----EPLGNVEAIKIRQPLP-GAPQR-- 870
              :||:.     |||.||||.|     ::..|.:..|    :|||    ::..:..| |..||  
Zfish   883 --RQQDSIITAAEEALEATESSSNTPADDSHPEIYTEHVFTDPLG----VQSSRDAPAGYTQREC 941

  Fly   871 -LSTDGNQTNNNNNSSSSSNLLFATKSLNPILETKDRDEPA-MSSVGPTMWLGAQDGWLYVHSSV 933
             |..||       .||...:|:              |:|.. ||||.||||||||:|.:||||||
Zfish   942 DLVKDG-------VSSLPQDLM--------------REEACKMSSVLPTMWLGAQNGCVYVHSSV 985

  Fly   934 GRWHECLHRVLLPDAVLAIVHVEARVVVALANAQLAVFRRQTDGQWDLNSYHLVTLGDRNHSIRC 998
            .:|.:|||.:.|.|:||.||||:.||:||||:..||:|.|..||||||::|||:.||..:|||||
Zfish   986 AQWRKCLHSIKLKDSVLGIVHVKGRVLVALADGTLAIFHRGVDGQWDLSNYHLLDLGRPHHSIRC 1050

  Fly   999 LCVAGERIWAAHRNKIFIVDPVSLNIVHSLDAHPRKESQVRQMAATGAGVWVSIRLDSTLRLYNT 1063
            :.:..:::|..:|||||:|.|.::.|..|.||||||||||||:|..|.|:||||||||||||::.
Zfish  1051 MTMVHDKVWCGYRNKIFVVHPKAMKIEKSFDAHPRKESQVRQLAWDGDGIWVSIRLDSTLRLFHA 1115

  Fly  1064 HTFEHKQDVDIEPYVSKMLGTGKLGFSFVRITALMVSCNRLWIGTSNGVIISVPLAE-------- 1120
            ||.:|.||||||||||||||||||||||||||||||||:||||||.||||||:||.:        
Zfish  1116 HTHQHLQDVDIEPYVSKMLGTGKLGFSFVRITALMVSCSRLWIGTGNGVIISIPLTDKSKDTAAS 1180

  Fly  1121 -VQPKSSSDPHGQ-----------MPLCCMANAQLSFHGHRDAVKFFVSVPMLQQPNLNGG---- 1169
             .||.::...:|.           :|.|.||:|||.|||||||||||.:||....|:.:|.    
Zfish  1181 SKQPGTAIRVYGDESGDKVTTGTFVPFCSMAHAQLCFHGHRDAVKFFTAVPGQVIPSASGSGVEA 1245

  Fly  1170 ---LTFTNKRPDM----LVMCGGEGYIDFRIND--NDMEN----SIQLEPNQTIENRGDKSYLIV 1221
               .:..:..|::    |||.|||||||||:.|  .|.||    |:.|:|   ...:.::|:|||
Zfish  1246 IADKSSESPTPELVKSVLVMSGGEGYIDFRMGDEGGDTENMDDPSLNLQP---FLAKAERSHLIV 1307

  Fly  1222 WHV 1224
            |.|
Zfish  1308 WQV 1310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sydNP_524652.1 Jnk-SapK_ap_N 43..196 CDD:286787 89/152 (59%)
JIP_LZII 362..430 CDD:293080 37/67 (55%)
Vps53_N 374..>524 CDD:282020 84/153 (55%)
spag9bXP_021336136.1 Jnk-SapK_ap_N 24..177 CDD:313040 89/152 (59%)
JIP_LZII 399..467 CDD:318633 37/67 (55%)
SMC_N <401..>545 CDD:330553 83/143 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595323
Domainoid 1 1.000 567 1.000 Domainoid score I223
eggNOG 1 0.900 - - E1_KOG2077
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2954
Inparanoid 1 1.050 798 1.000 Inparanoid score I484
OMA 1 1.010 - - QHG49339
OrthoDB 1 1.010 - - D165438at33208
OrthoFinder 1 1.000 - - FOG0004823
OrthoInspector 1 1.000 - - otm25756
orthoMCL 1 0.900 - - OOG6_104719
Panther 1 1.100 - - O PTHR13886
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2032
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.770

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