DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and KCC4

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_009907.2 Gene:KCC4 / 850334 SGDID:S000000529 Length:1037 Species:Saccharomyces cerevisiae


Alignment Length:620 Identity:187/620 - (30%)
Similarity:282/620 - (45%) Gaps:129/620 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MRAAAAEAVAAGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSL- 67
            |..|..|..:|    .:|...||.:.||.|||.|:.|||::.:|:.|..:.|||:::    ||: 
Yeast     1 MTVANTETHSA----AKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVIS----KSIF 57

  Fly    68 ---------DVV--GKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHG 121
                     |.|  ..|.|||..:||..||:::.||.|..|.:::::|:||...||||:.:|.||
Yeast    58 NNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHG 122

  Fly   122 KLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSC 186
            .|.|.:|...|:|||.|:.|||...||||||||||||||...::||||||::.:..|.:.|.|||
Yeast   123 PLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSC 187

  Fly   187 GSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCGTLPFDDE--HVPTLFRKIKSGIFPIPE-- 247
            |||:|||||::||..|.|...|:|||||||:|||.|.||||:|  :|..|..|::.|.|.:|.  
Yeast   188 GSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDT 252

  Fly   248 YLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQ-----------KDLP---AYLFP-------S 291
            .:::...:|:.::|.|||.:|..|.:|..|...:           ||||   .||:|       :
Yeast   253 EISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHT 317

  Fly   292 SIEQDSNVIDTYAVA-------EVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIID-------- 341
            |...|.:::....|.       ::.:|.....|.....|        .|:.|...:|        
Yeast   318 SASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKIL--------YALLYRFKLDSVRGSNKK 374

  Fly   342 ----------NKRFADDAANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATVTVGGGTSAS 396
                      |||.:..:::....:||..:..:|.       .::|..|....::     ....|
Yeast   375 NRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPR-------RRTSKRHSREFSS-----SRKRS 427

  Fly   397 SGTATPVPPVAGGTPSSTIPIRPHPERIAPMRDRQLAMSVQTSGGGAFPEKTARGGTPIKRAKWH 461
            |...:..|     |.||.||:| ..:||..:.... |.:..|..|...|.|.    ...||:...
Yeast   428 SFLLSSNP-----TDSSPIPLR-SSKRITHINVAS-ANTQATPSGVPNPHKR----NSKKRSSKR 481

  Fly   462 LGIRSQSKPNDIMLEVYRAMKALSY--------EWKIINPYHVRV------------RRQNVKTG 506
            |.....:|.:.:      ..|:||.        :|:.|.....|.            ..:..:..
Yeast   482 LSYMPNTKRSSL------TSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELA 540

  Fly   507 KFSKMSLQLYQVDAKSYLLDFKSLTNDEVEQGDDV 541
            |..|..||....:||...::.:.:..||.  |.:|
Yeast   541 KREKAELQRKVQEAKRQSVNAQKINEDEF--GSEV 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 122/270 (45%)
UBA_AID_AMPKalpha 297..360 CDD:270521 12/87 (14%)
AMPKA_C 457..580 CDD:213378 19/105 (18%)
KCC4NP_009907.2 PKc_like 19..285 CDD:419665 121/269 (45%)
Kcc4p_like_C 920..1034 CDD:213379
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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