DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and CIPK18

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_174217.1 Gene:CIPK18 / 839797 AraportID:AT1G29230 Length:520 Species:Arabidopsis thaliana


Alignment Length:432 Identity:147/432 - (34%)
Similarity:226/432 - (52%) Gaps:65/432 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPH 87
            :.:|.|.||..||.|||.||.:.::..:..|||:|:::::||....:|..|:|||..|:..|||:
plant    69 ILMGKYELGKLLGHGTFAKVYLAQNIKSGDKVAIKVIDKEKIMKSGLVAHIKREISILRRVRHPY 133

  Fly    88 IIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDL 152
            |:.|::|::|.|.|:.:||||.|||||:.:.| |:|.|..|||:|||:||.|.:||...:.||||
plant   134 IVHLFEVMATKSKIYFVMEYVGGGELFNTVAK-GRLPEETARRYFQQLISSVSFCHGRGVYHRDL 197

  Fly   153 KPENLLLDHNMHVKIADFGLS----NMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCG 213
            ||||||||:..::|::|||||    .:..|| ...|.||:|.|.||||::.|.|...:.|:||||
plant   198 KPENLLLDNKGNLKVSDFGLSAVAEQLRQDG-LCHTFCGTPAYIAPEVLTRKGYDAAKADVWSCG 261

  Fly   214 VILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHE 278
            |||:.|:.|.:||.|:::..:::||..|.|..|.:.:..:|.|:.::|..:|..|..|.||.|:.
plant   262 VILFVLMAGHIPFYDKNIMVMYKKIYKGEFRCPRWFSSDLVRLLTRLLDTNPDTRITIPEIMKNR 326

  Fly   279 WFQKDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNK 343
            ||:|......|  .||.|          ::|.:...:|.|..:|..|....:..|     ..|.|
plant   327 WFKKGFKHVKF--YIEDD----------KLCREDEDEEEEASSSGRSSTVSESDA-----EFDVK 374

  Fly   344 RFADDAANQINEINNF------------------------FVAGSPPPPPPPPVPQ--SSMDHQA 382
            |....:..:.:.:|.|                        ||:|:       ||.:  |.::..|
plant   375 RMGIGSMPRPSSLNAFDIISFSSGFDLSGLFEEEGGEGTRFVSGA-------PVSKIISKLEEIA 432

  Fly   383 PLATVTV---------GGGTSASSGTATPVPPVAGGTPSSTI 415
            .:.:.||         .|....:.|..|....:...|||..:
plant   433 KIVSFTVRKKEWSLRLEGCREGAKGPLTIAAEIFELTPSLVV 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 114/258 (44%)
UBA_AID_AMPKalpha 297..360 CDD:270521 11/86 (13%)
AMPKA_C 457..580 CDD:213378
CIPK18NP_174217.1 Protein Kinases, catalytic domain 73..327 CDD:473864 113/255 (44%)
CIPK_C 388..499 CDD:213380 17/94 (18%)
Blue background indicates that the domain is not in the aligned region.

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