DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AMPKalpha and SIP3

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_194825.1 Gene:SIP3 / 829221 AraportID:AT4G30960 Length:441 Species:Arabidopsis thaliana


Alignment Length:346 Identity:135/346 - (39%)
Similarity:200/346 - (57%) Gaps:31/346 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 AEAVAAGSANGQPLVKI-GHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGK 72
            |:.|..||..|.....: |.|.||..||.|||.||....:..|...||:|::.::|:..:.:|.:
plant     4 AKPVENGSDGGSSTGLLHGRYELGRLLGHGTFAKVYHARNIQTGKSVAMKVVGKEKVVKVGMVDQ 68

  Fly    73 IRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIIS 137
            |:|||..:::.:||:|::|::|:::.|.|:..||.|.|||||..:.| |:|:|..||.:|||:||
plant    69 IKREISVMRMVKHPNIVELHEVMASKSKIYFAMELVRGGELFAKVAK-GRLREDVARVYFQQLIS 132

  Fly   138 GVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLS----NMMLDGEFLRTSCGSPNYAAPEVIS 198
            .||:||...:.||||||||||||...::|:.|||||    ::..|| .|.|:||:|.|.|||||.
plant   133 AVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSAFTEHLKQDG-LLHTTCGTPAYVAPEVIL 196

  Fly   199 GKLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQV 263
            .|.|.|.:.|:|||||||:.||.|.|||.|:::..::|||..|.|..|.:|:.....||.::|..
plant   197 KKGYDGAKADLWSCGVILFVLLAGYLPFQDDNLVNMYRKIYRGDFKCPGWLSSDARRLVTKLLDP 261

  Fly   264 DPLKRANIEEIKKHEWFQKDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGV----KETEVHNSLL 324
            :|..|..||::....||:|.       ::..::..|..|....|....|.|    :|||..|   
plant   262 NPNTRITIEKVMDSPWFKKQ-------ATRSRNEPVAATITTTEEDVDFLVHKSKEETETLN--- 316

  Fly   325 SGDPHDQLAIAYHLIIDNKRF 345
                      |:|:|..::.|
plant   317 ----------AFHIIALSEGF 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 114/259 (44%)
UBA_AID_AMPKalpha 297..360 CDD:270521 13/53 (25%)
AMPKA_C 457..580 CDD:213378
SIP3NP_194825.1 Protein Kinases, catalytic domain 23..277 CDD:473864 113/255 (44%)
CIPK_C 316..432 CDD:213380 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.