DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AMPKalpha and mark3b

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_009293196.1 Gene:mark3b / 767634 ZFINID:ZDB-GENE-060929-80 Length:834 Species:Danio rerio


Alignment Length:468 Identity:166/468 - (35%)
Similarity:247/468 - (52%) Gaps:67/468 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PQMRAAAAEAVAAGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKS 66
            |....|......|..|:.||  .||:|.|..|:|.|.|.|||:..|.:|..:||:||:::.::..
Zfish    52 PGRSGARCRNSIASCADEQP--HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNP 114

  Fly    67 LDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRF 131
            .. :.|:.||::.:|:..||:|:||::||.|...::::|||.||||:|||:|.||:::|.:||..
Zfish   115 TS-LQKLFREVRIMKILNHPNIVKLFEVIETDKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAK 178

  Fly   132 FQQIISGVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEV 196
            |:||:|.|.|||:..|||||||.||||||.:|::||||||.||....|..|.|.||||.|||||:
Zfish   179 FRQIVSAVQYCHQKHIVHRDLKAENLLLDADMNIKIADFGFSNEFTIGNKLDTFCGSPPYAAPEL 243

  Fly   197 ISGKLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQML 261
            ..||.|.|||||:||.|||||.|:.|:||||.:::..|..::..|.:.||.|::....||:.:.|
Zfish   244 FQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFL 308

  Fly   262 QVDPLKRANIEEIKKHEWF-----QKDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHN 321
            .::|:||..:|:|.|..|.     :::|..::.|.....|...||      :....|....|:|.
Zfish   309 VLNPVKRGTLEQIMKDRWINAGCEEEELKPFVEPELDISDQKRID------IMVGMGYSREEIHE 367

  Fly   322 SLLSGDPHDQLAIAYHLIIDNKRF---ADDAANQIN----------EINNFFVAGSPPP------ 367
            | |:...:|::...| |::..|..   ..|:::..|          |.||    |..|.      
Zfish   368 S-LTRMKYDEITATY-LLLGRKSTELEVSDSSSSSNLSLAKARPNSEHNN----GQSPSHLKVQK 426

  Fly   368 ----------------PPPPPV--PQSSM------DHQAPLATVTVGGGTSASSGTATPVPPVAG 408
                            |..|.|  |:.|.      :|:...:.......:|.|.|.| |..|:.|
Zfish   427 NASTNQKQRRYSDQAGPTIPSVGYPKRSQTTSAESEHKEEGSAQARKSSSSGSRGMA-PASPMLG 490

  Fly   409 GTPS---STIPIR 418
            ...:   :.||.|
Zfish   491 NANNPNKADIPDR 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 122/254 (48%)
UBA_AID_AMPKalpha 297..360 CDD:270521 16/75 (21%)
AMPKA_C 457..580 CDD:213378
mark3bXP_009293196.1 STKc_MARK 75..327 CDD:270974 120/252 (48%)
S_TKc 76..327 CDD:214567 120/251 (48%)
UBA_MARK3_4 345..387 CDD:270590 11/49 (22%)
MARK1-3_C 735..832 CDD:213381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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