DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and LOC690235

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_038938164.1 Gene:LOC690235 / 690235 RGDID:1582875 Length:502 Species:Rattus norvegicus


Alignment Length:500 Identity:152/500 - (30%)
Similarity:231/500 - (46%) Gaps:96/500 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 YLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLY 92
            |::..|:|.|.:..||:..|::|...||||||    ||.......:..|:..:....||:||.|:
  Rat    27 YMILNTIGHGGYATVKLALHRLTGTPVAVKIL----IKKEHWCHPVTSEVDIMMSIHHPNIISLF 87

  Fly    93 QVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENL 157
            |||.|...|::|||...|.:|:..|.:.|:|||.:||..|:|::|...|||...||||||||:|:
  Rat    88 QVIETKKKIYLIMELAEGKQLYHRIREAGQLQEDEARGIFRQLLSATGYCHARGIVHRDLKPDNI 152

  Fly   158 LLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCG 222
            ::|....:||.||||:..:..|:.||..||:..:||||::.||||.||:||:|:.||:||.:..|
  Rat   153 MIDTRGRIKIIDFGLATHVRPGQKLRYHCGTYAFAAPEMLLGKLYEGPKVDVWTLGVVLYCMTVG 217

  Fly   223 TLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDLPAY 287
            .|||||.::|.|..::.||.:.:|..::.::.:::..:|:|:|..|..|.::..|.|.:..... 
  Rat   218 RLPFDDSNIPQLRSQVVSGKYAVPPGMSGELKDMLSLLLKVNPQHRPTIPDLLTHPWLKTGSEG- 281

  Fly   288 LFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNKRFADDAANQ 352
             ||...|:...:....||.....:.|.|..:|.:||.. :.::|....|||:   :|.|....:.
  Rat   282 -FPQPSEEWIPLRPDPAVLRAMEQIGFKAQDVKDSLYQ-NKYNQTVACYHLL---ERQALQGCDN 341

  Fly   353 INEINNFFVAGSPPPPPPPPVPQSSMDHQA--PLATVTVG------GGTSASSGTATPVPPVAG- 408
                     :..|.|..|...|..|:|:.|  |......|      |.:|.|.|:.....|..| 
  Rat   342 ---------STRPGPMNPWMAPFPSLDNPATFPQELRRRGSEPRWLGSSSNSQGSTYDQKPSYGL 397

  Fly   409 ----------------GTP--------SSTIP-------------------------IRPHPERI 424
                            .||        |.::|                         :.|.|.|.
  Rat   398 VKRASWPGGRLCRPLLTTPAVDLTNRISRSVPCFSSVHSRGEKNIKSTEDKSSASAEVNPVPSRA 462

  Fly   425 APMRDRQLAMSVQTSGGG------AFPEKTARGGTPIKRAKWHLG 463
            .|.|.|..|.::   |.|      .||          .|.|.|||
  Rat   463 WPKRFRGWAKNI---GNGLMQLCCCFP----------SRKKPHLG 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 100/251 (40%)
UBA_AID_AMPKalpha 297..360 CDD:270521 13/62 (21%)
AMPKA_C 457..580 CDD:213378 4/6 (67%)
LOC690235XP_038938164.1 STKc_AMPK-like 26..274 CDD:270905 100/250 (40%)
UBA_MARK_Par1 294..333 CDD:270522 11/42 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24343
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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