DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and Sik3

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001258145.2 Gene:Sik3 / 684112 RGDID:1593938 Length:1369 Species:Rattus norvegicus


Alignment Length:456 Identity:166/456 - (36%)
Similarity:245/456 - (53%) Gaps:49/456 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AAAAEAVAAGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVV 70
            ||......|.::.|....:||:|.:..|:|.|.|..||...|.:|:.|||:||:::.::.. :.:
  Rat    44 AACPPRPTAPASRGSMAARIGYYEIDRTIGKGNFAVVKRATHLVTKAKVAIKIIDKTQLDE-ENL 107

  Fly    71 GKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQI 135
            .||.||:|.:|:..|||||:||||:.|...|:::.||.||||:||::|.||::.|.:|||.|:||
  Rat   108 KKIFREVQIMKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQI 172

  Fly   136 ISGVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGK 200
            ::.|.:||...|||||||.||||||.|:::||||||.||:...|:.|:|.||||.|||||:..||
  Rat   173 VTAVYFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNLFTPGQLLKTWCGSPPYAAPELFEGK 237

  Fly   201 LYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDP 265
            .|.||:|||||.||:||.|:||.||||...:..|..::.||.|.||.:::.:..:|:..||.:||
  Rat   238 EYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTECEHLIRHMLVLDP 302

  Fly   266 LKRANIEEIKKHEWFQ--------KDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNS 322
            .||.::|:|.:|.|.:        :.|.|.......|:.:..::. .|.......|:.:.....|
  Rat   303 NKRLSMEQICRHRWMKLGDADPNFERLIAECQQLKEERQAEPLND-EVLLAMEDMGLDKERTLQS 366

  Fly   323 LLSGDPHDQLAIAYHLIIDNKRFADDAANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATV 387
            |.| |.:|..:..|.|:.|.           ::.|.....|:.|..|      .:|..|||:...
  Rat   367 LRS-DAYDHYSAIYSLLCDR-----------HKKNKTLRPGALPSTP------QAMTFQAPVNIQ 413

  Fly   388 TVGGGTSASSGTATPVPPVAGGTPSSTI-------------PIRPHPERIAPMRDRQLAMSVQTS 439
            ....||:.:    ..||.|....|.:.|             ...|.||.:.    |.|:|...|.
  Rat   414 AEQTGTAMN----ISVPQVQLINPENQIIEPDGAVNLDSDEGEEPSPEALV----RYLSMRRHTV 470

  Fly   440 G 440
            |
  Rat   471 G 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 125/254 (49%)
UBA_AID_AMPKalpha 297..360 CDD:270521 11/62 (18%)
AMPKA_C 457..580 CDD:213378
Sik3NP_001258145.2 STKc_SIK 65..317 CDD:270973 123/252 (49%)
UBA_like_SF 346..390 CDD:473871 10/56 (18%)
Blue background indicates that the domain is not in the aligned region.

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