DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and Gm7356

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001365198.1 Gene:Gm7356 / 664821 MGIID:3646178 Length:549 Species:Mus musculus


Alignment Length:480 Identity:146/480 - (30%)
Similarity:232/480 - (48%) Gaps:77/480 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 YLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLY 92
            |.:..|||.||:.||.:.:|::|...||||:|    :|:........:|...:|..:||:|:.|.
Mouse    69 YKVVRTLGHGTYAKVLLAQHRLTGTPVAVKVL----LKNKPCFQPAMKEANIMKKIKHPNIVSLL 129

  Fly    93 QVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENL 157
            |||.|.:..::|||.|.|.||::||...|.::|.:||:.|.||:|.|.|||...||||||||:|:
Mouse   130 QVIETKTRGYLIMELVEGQELYEYIKNSGHIEEDEARQIFLQILSAVGYCHGSGIVHRDLKPDNI 194

  Fly   158 LLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCG 222
            ::|....:||.|||||..:..|:.|...||:..:.|||:...|.|.|.:.|:|:.|||||.::.|
Mouse   195 MIDSKGSIKIIDFGLSTQVKPGQLLHEHCGAYAFGAPELFLWKSYDGTKSDLWALGVILYYMVVG 259

  Fly   223 TLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQ---KDL 284
            .:|||...:|.|..:|.:|::|.|..::.::.:|:..::.|:|..|..:.|:.||.|.:   |.|
Mouse   260 NVPFDSFIIPELQMQILAGVYPAPCGVSNELKDLLSLLMTVNPKYRPTVTEVMKHPWLKGYCKGL 324

  Fly   285 P-AYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNKRFADD 348
            . .:..|..:..|.:::|....      .|.:..::..| ||.:..::::.||:|:       ::
Mouse   325 TNIHEEPVPVRPDPDIVDAMQY------IGFQAKDIRES-LSKEKFNEMSAAYYLL-------EE 375

  Fly   349 AANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATVTVGGGTSA----SSGTATPV------ 403
            .|.| .|:.    :...|.......|..|||          .|.||.    .||:| |:      
Mouse   376 QALQ-REVR----STQAPTVSQVKAPFPSMD----------AGATSCLKIKRSGSA-PILGRSVW 424

  Fly   404 PPVAGGTPSSTIPIRP-------------HPERIAPMRDRQ--LAMSV----QTS--GGGAFPEK 447
            |...|..|:....:|.             .|.::.|.:|:.  .||||    .||  ...:..||
Mouse   425 PSSIGQVPAYGQKVRQRAGRRSTGHGLVFRPNQMTPTQDQHHIRAMSVPCMLSTSSISEESVSEK 489

  Fly   448 TARG--------GTPIKRAKWHLGI 464
            ....        ..||:...|..||
Mouse   490 REENLSNSAPAEDKPIRSRGWRRGI 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 98/251 (39%)
UBA_AID_AMPKalpha 297..360 CDD:270521 11/62 (18%)
AMPKA_C 457..580 CDD:213378 3/8 (38%)
Gm7356NP_001365198.1 STKc_AMPK-like 68..316 CDD:270905 98/250 (39%)
UBA_MARK_Par1 336..375 CDD:270522 9/52 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24343
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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