DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and Smok3b

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001034978.1 Gene:Smok3b / 622474 MGIID:3615348 Length:504 Species:Mus musculus


Alignment Length:472 Identity:134/472 - (28%)
Similarity:225/472 - (47%) Gaps:55/472 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 YLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLY 92
            |::..|:|.|....||:.:|::|...||||.:.:::.....|:.    |::.|.:..||:||.|.
Mouse    28 YVMLETIGHGGCATVKLAQHRLTGTHVAVKTIRKREYWCNRVIS----EVELLMMADHPNIISLL 88

  Fly    93 QVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENL 157
            |||.|...:::|||...|..|:.:|.|.|.||||:||..|:|::|.::|||...||||||||:|:
Mouse    89 QVIETKKKVYLIMELCKGKSLYQHIRKAGYLQEHEARALFKQLLSAMNYCHNQGIVHRDLKPDNI 153

  Fly   158 LLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCG 222
            :::.:..|||.||||...:..|:.|...||:..::||||:....|.||::|:|:.||:||.::.|
Mouse   154 MVEKDGKVKIIDFGLGTKVKPGQKLNLFCGTYPFSAPEVLLSTPYDGPKIDVWTLGVVLYFMVTG 218

  Fly   223 TLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDLPAY 287
            .:|||...:..|.::|.:|.:.||..|:.::.:|:..::..:|..|..:.|:..|.|..:.  :.
Mouse   219 KIPFDACSIKKLVKRILAGKYSIPSRLSAELQDLLSLLMTANPKLRPTVAEVMVHPWVTEG--SG 281

  Fly   288 LFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNKRFADDAANQ 352
            :||...|:.:.:....|:.:.....|.:..::.:||.. ...:|...:|.|:........|...:
Mouse   282 VFPDPCEEQTPLKPDPAIVKAMGHIGFQAQDIEDSLRQ-RKFNQTMASYCLLKKQILKECDRPTR 345

  Fly   353 INEINNFFVAGSPPPPP-----------------PPPVPQSSMDHQAPLATVTVGGGTSASSGTA 400
            ...:|     .|..|.|                 .|..|.||.:.|..:.    |..||......
Mouse   346 ARPVN-----PSVTPFPSLVDTATTRLGLRRRENEPTCPWSSANRQVSVC----GKSTSKKRDRR 401

  Fly   401 TPVPPVAGGTPSSTIPIRPHPERIAPMRDR------QLAMSVQTSGGGAFPEKTARGGT------ 453
            ...|.|. |.|..|.|...|..    .|.|      .:..:||.:..    |::.:|.|      
Mouse   402 VSWPSVL-GRPRHTAPTMDHTR----TRTRSVPCICSMFCTVQPNSS----EESTQGHTRASAAD 457

  Fly   454 -PIKRAKWHLGIRSQSK 469
             |:....|..||:..::
Mouse   458 KPVHSRGWPRGIKGWTR 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 92/251 (37%)
UBA_AID_AMPKalpha 297..360 CDD:270521 9/62 (15%)
AMPKA_C 457..580 CDD:213378 3/13 (23%)
Smok3bNP_001034978.1 STKc_AMPK-like 27..275 CDD:270905 92/250 (37%)
UBA_MARK_Par1 295..334 CDD:270522 7/39 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..421 9/36 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 441..468 5/30 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24343
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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