DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and mark4b

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_005157655.1 Gene:mark4b / 571279 ZFINID:ZDB-GENE-100330-2 Length:796 Species:Danio rerio


Alignment Length:454 Identity:158/454 - (34%)
Similarity:241/454 - (53%) Gaps:63/454 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQ 78
            |..::.||  .||:|.|..|:|.|.|.|||:..|.:|..:||:||:::.::.... :.|:.||::
Zfish    46 ASCSDEQP--HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTS-LQKLFREVR 107

  Fly    79 NLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCH 143
            .:|...||:|::|::||.|...::::|||.||||:|||:|.||:::|.:||..|:||:|.|.|||
Zfish   108 IMKGLNHPNIVQLFEVIETEKTLYLVMEYASGGEVFDYLVSHGRMKEKEARGKFRQIVSAVHYCH 172

  Fly   144 RHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVD 208
            ...|||||||.||||||.:.::||||||.||....|..|.|.||||.|||||:..||.|.|||||
Zfish   173 LKNIVHRDLKAENLLLDADSNIKIADFGFSNEFTLGSKLDTFCGSPPYAAPELFQGKKYDGPEVD 237

  Fly   209 IWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEE 273
            |||.|||||.|:.|:||||.:::..|..::..|.:.:|.|::.....::.:.|.::|.||..:|:
Zfish   238 IWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCEGILRRFLVLNPTKRCTLEQ 302

  Fly   274 IKKHEW----FQKD-LPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLA 333
            |.|.:|    ::.| |..|:.|.....|::.:|      |....|....|:.::|.: ..:::: 
Zfish   303 IMKDKWMNVGYENDELKPYIEPVEDYNDTSRVD------VMVGMGYSRDEIKDALTT-QKYNEI- 359

  Fly   334 IAYHLIIDNKRFADDAANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATV---TVGGGTSA 395
            .|.:|::..|.  :|..                        :|.......||.|   .:..|||.
Zfish   360 FATYLLLGRKN--EDGM------------------------ESRSSSSLSLARVRPSAITNGTSK 398

  Fly   396 SSGTATPVPPVAGGTPSSTIPIRPH--PERIAPMRDRQ------LAMSVQTSGGGAFPEKTARG 451
            .|.|::          ||:.....|  |:|.|....||      ...||..:.....|..|..|
Zfish   399 HSSTSS----------SSSTSASSHTKPQRSASTYHRQRRHSDFCGPSVPVAHPKRSPTSTGEG 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 119/258 (46%)
UBA_AID_AMPKalpha 297..360 CDD:270521 9/62 (15%)
AMPKA_C 457..580 CDD:213378
mark4bXP_005157655.1 STKc_MARK 57..309 CDD:270974 116/252 (46%)
S_TKc 58..309 CDD:214567 116/251 (46%)
UBA_like_SF 327..369 CDD:304366 8/49 (16%)
MARK4_C 699..796 CDD:213382
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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