DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and mark4b

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_005157655.1 Gene:mark4b / 571279 ZFINID:ZDB-GENE-100330-2 Length:796 Species:Danio rerio


Alignment Length:454 Identity:158/454 - (34%)
Similarity:241/454 - (53%) Gaps:63/454 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQ 78
            |..::.||  .||:|.|..|:|.|.|.|||:..|.:|..:||:||:::.::.... :.|:.||::
Zfish    46 ASCSDEQP--HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTS-LQKLFREVR 107

  Fly    79 NLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCH 143
            .:|...||:|::|::||.|...::::|||.||||:|||:|.||:::|.:||..|:||:|.|.|||
Zfish   108 IMKGLNHPNIVQLFEVIETEKTLYLVMEYASGGEVFDYLVSHGRMKEKEARGKFRQIVSAVHYCH 172

  Fly   144 RHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVD 208
            ...|||||||.||||||.:.::||||||.||....|..|.|.||||.|||||:..||.|.|||||
Zfish   173 LKNIVHRDLKAENLLLDADSNIKIADFGFSNEFTLGSKLDTFCGSPPYAAPELFQGKKYDGPEVD 237

  Fly   209 IWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEE 273
            |||.|||||.|:.|:||||.:::..|..::..|.:.:|.|::.....::.:.|.::|.||..:|:
Zfish   238 IWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCEGILRRFLVLNPTKRCTLEQ 302

  Fly   274 IKKHEW----FQKD-LPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLA 333
            |.|.:|    ::.| |..|:.|.....|::.:|      |....|....|:.::|.: ..:::: 
Zfish   303 IMKDKWMNVGYENDELKPYIEPVEDYNDTSRVD------VMVGMGYSRDEIKDALTT-QKYNEI- 359

  Fly   334 IAYHLIIDNKRFADDAANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATV---TVGGGTSA 395
            .|.:|::..|.  :|..                        :|.......||.|   .:..|||.
Zfish   360 FATYLLLGRKN--EDGM------------------------ESRSSSSLSLARVRPSAITNGTSK 398

  Fly   396 SSGTATPVPPVAGGTPSSTIPIRPH--PERIAPMRDRQ------LAMSVQTSGGGAFPEKTARG 451
            .|.|::          ||:.....|  |:|.|....||      ...||..:.....|..|..|
Zfish   399 HSSTSS----------SSSTSASSHTKPQRSASTYHRQRRHSDFCGPSVPVAHPKRSPTSTGEG 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 119/258 (46%)
UBA_AID_AMPKalpha 297..360 CDD:270521 9/62 (15%)
AMPKA_C 457..580 CDD:213378
mark4bXP_005157655.1 STKc_MARK 57..309 CDD:270974 116/252 (46%)
UBA_like_SF 327..369 CDD:473871 8/49 (16%)
MARK4_C 699..796 CDD:213382
Blue background indicates that the domain is not in the aligned region.

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