DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and mark4a

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_021332218.1 Gene:mark4a / 569346 ZFINID:ZDB-GENE-060531-156 Length:762 Species:Danio rerio


Alignment Length:457 Identity:159/457 - (34%)
Similarity:250/457 - (54%) Gaps:60/457 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RAAAAEAVAAGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDV 69
            |:..|....:.::....|..||:|.|..|:|.|.|.|||:..|.:|..:||:||:::.::.... 
Zfish    35 RSLGARCRNSMASYSDELPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAIKIIDKTQLNPTS- 98

  Fly    70 VGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQ 134
            :.|:.||::.:|...||:|::|::||.|...::::|||.||||:|||:|.||:::|.:||..|:|
Zfish    99 LQKLFREVRIMKTLHHPNIVQLFEVIETEKTLYLVMEYASGGEVFDYLVSHGRMKEIEARAKFRQ 163

  Fly   135 IISGVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISG 199
            |:|.|.|||:..|||||||.||||||.:.::||||||.||....|..|.|.||||.|||||:..|
Zfish   164 IVSAVHYCHQKNIVHRDLKAENLLLDADSNIKIADFGFSNEFTLGNKLDTFCGSPPYAAPELFQG 228

  Fly   200 KLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVD 264
            |.|.||||||||.|||||.|:.|:||||.:::..|..::..|.:.:|.|::.....::.:.|.::
Zfish   229 KKYDGPEVDIWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCEGILRRFLVLN 293

  Fly   265 PLKRANIEEIKKHEWFQ-----KDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLL 324
            |.||..:|::.|.:|..     .:|..::.|:....|:|.|      |:....|....|:.:|||
Zfish   294 PSKRCTLEQVMKDKWMNAGHDGDELKPHIEPTEDYSDANRI------EIMVGMGFTTEEIKDSLL 352

  Fly   325 SGDPHDQLAIAYHLIIDNKRFADDAANQINEINNFFVAGSP--PPPPPPPVPQSSMDHQAPLATV 387
            : ..::::...|.|:  ..:..|.|.::        |:||.  |...|.|:...:..|.:     
Zfish   353 N-QKYNEVTATYLLL--GLKTEDGAESR--------VSGSMTLPRVRPSPITNGTNKHSS----- 401

  Fly   388 TVGGGTSASSGTATPVPP-------------VAGGTPSSTIPIRPHPERIAPMRDRQLAMSVQTS 439
              ...:|:||.:.|....             .:.|.||  :|:. ||:| :|           ||
Zfish   402 --SSSSSSSSHSKTQRSASTYHRQRRHSDFFCSAGGPS--MPVM-HPKR-SP-----------TS 449

  Fly   440 GG 441
            ||
Zfish   450 GG 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 117/254 (46%)
UBA_AID_AMPKalpha 297..360 CDD:270521 12/62 (19%)
AMPKA_C 457..580 CDD:213378
mark4aXP_021332218.1 STKc_MARK 57..309 CDD:270974 115/252 (46%)
UBA_MARK3_4 327..369 CDD:270590 11/50 (22%)
MARK4_C 662..762 CDD:213382
Blue background indicates that the domain is not in the aligned region.

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