DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and mark4a

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_005165424.1 Gene:mark4a / 569346 ZFINID:ZDB-GENE-060531-156 Length:762 Species:Danio rerio


Alignment Length:457 Identity:159/457 - (34%)
Similarity:250/457 - (54%) Gaps:60/457 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RAAAAEAVAAGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDV 69
            |:..|....:.::....|..||:|.|..|:|.|.|.|||:..|.:|..:||:||:::.::.... 
Zfish    35 RSLGARCRNSMASYSDELPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAIKIIDKTQLNPTS- 98

  Fly    70 VGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQ 134
            :.|:.||::.:|...||:|::|::||.|...::::|||.||||:|||:|.||:::|.:||..|:|
Zfish    99 LQKLFREVRIMKTLHHPNIVQLFEVIETEKTLYLVMEYASGGEVFDYLVSHGRMKEIEARAKFRQ 163

  Fly   135 IISGVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISG 199
            |:|.|.|||:..|||||||.||||||.:.::||||||.||....|..|.|.||||.|||||:..|
Zfish   164 IVSAVHYCHQKNIVHRDLKAENLLLDADSNIKIADFGFSNEFTLGNKLDTFCGSPPYAAPELFQG 228

  Fly   200 KLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVD 264
            |.|.||||||||.|||||.|:.|:||||.:::..|..::..|.:.:|.|::.....::.:.|.::
Zfish   229 KKYDGPEVDIWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCEGILRRFLVLN 293

  Fly   265 PLKRANIEEIKKHEWFQ-----KDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLL 324
            |.||..:|::.|.:|..     .:|..::.|:....|:|.|      |:....|....|:.:|||
Zfish   294 PSKRCTLEQVMKDKWMNAGHDGDELKPHIEPTEDYSDANRI------EIMVGMGFTTEEIKDSLL 352

  Fly   325 SGDPHDQLAIAYHLIIDNKRFADDAANQINEINNFFVAGSP--PPPPPPPVPQSSMDHQAPLATV 387
            : ..::::...|.|:  ..:..|.|.::        |:||.  |...|.|:...:..|.:     
Zfish   353 N-QKYNEVTATYLLL--GLKTEDGAESR--------VSGSMTLPRVRPSPITNGTNKHSS----- 401

  Fly   388 TVGGGTSASSGTATPVPP-------------VAGGTPSSTIPIRPHPERIAPMRDRQLAMSVQTS 439
              ...:|:||.:.|....             .:.|.||  :|:. ||:| :|           ||
Zfish   402 --SSSSSSSSHSKTQRSASTYHRQRRHSDFFCSAGGPS--MPVM-HPKR-SP-----------TS 449

  Fly   440 GG 441
            ||
Zfish   450 GG 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 117/254 (46%)
UBA_AID_AMPKalpha 297..360 CDD:270521 12/62 (19%)
AMPKA_C 457..580 CDD:213378
mark4aXP_005165424.1 STKc_MARK 57..309 CDD:270974 115/252 (46%)
UBA_MARK3_4 327..369 CDD:270590 11/50 (22%)
MARK4_C 662..762 CDD:213382
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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