DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and sik2b

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_696325.5 Gene:sik2b / 567919 ZFINID:ZDB-GENE-071012-1 Length:896 Species:Danio rerio


Alignment Length:613 Identity:191/613 - (31%)
Similarity:294/613 - (47%) Gaps:139/613 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPH 87
            |::|.|.:..|||.|.|..||:..|:||:.:||:||:::.::.::: :.||.||:|.:|:..|||
Zfish    17 VRVGFYDIERTLGKGNFAVVKLARHRITKTEVAIKIIDKTQLDAVN-LEKIYREVQIMKMLDHPH 80

  Fly    88 IIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDL 152
            |||||||:.|.:.::::.||...||:|||:.|||:|.|.:|||.|.||:|.|:|||...||||||
Zfish    81 IIKLYQVMETKNMLYLVTEYAKNGEIFDYLAKHGRLSEPEARRKFWQILSAVEYCHNRNIVHRDL 145

  Fly   153 KPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILY 217
            |.||||||.:|::||||||..|....|:.|.|.||||.||||||..|:.|.||::||||.||:||
Zfish   146 KAENLLLDGHMNIKIADFGFGNFFQSGKPLATWCGSPPYAAPEVFEGQQYEGPQLDIWSMGVVLY 210

  Fly   218 ALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQK 282
            .|:||.||||...:|.|.:::..|.|.||.::.:...:|:.:||.:||.||.:|.:||:|:|...
Zfish   211 VLVCGALPFDGPSLPVLRQRVLEGRFRIPYFMTEDCEHLIRRMLVLDPSKRLSIGQIKEHKWMVM 275

  Fly   283 DLPA---YLFPSSIEQDSNVID-TYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIID-- 341
            ::|.   .|:..:.|.::.|.: ...|..:....|:.:.:...| |....::..|..|:|:::  
Zfish   276 EVPVQRPMLYQQTTEGEAGVGEYNEQVLRLMHSLGIDQHKTVES-LQNKSYNHFAAIYYLLVERL 339

  Fly   342 ---------------NKRFADDAANQINEINNFFVAGSPPPPP------------PPPVPQSSMD 379
                           .:|.....|.|.      .|..|...|.            ||.|||:|.|
Zfish   340 KAHRCSFPVEPRLDARQRRPSTIAEQT------LVKASSAAPQVSLLPQNVRLLRPPAVPQTSAD 398

  Fly   380 ----------------HQAPLATVTVGGGTSASSGTATPVPPVAGGTPSSTIPIRPHPERIAPMR 428
                            .:..:.|..:.|      ....|:||||....|::.|        :.|.
Zfish   399 SFTFPQSSCAAEHSLMEEEEVGTPKING------CMLDPLPPVAVRKSSASSP--------SNMM 449

  Fly   429 DRQLAMSVQTSGGGAFPE------------KTARGGTPIKRAKWHLGIRSQSKPNDIMLEVYRAM 481
            :..:...::|..    |:            :|||.|     .:.|......::|..|        
Zfish   450 ETSIDEGIETEE----PDTEDDHTHVFNAYQTARFG-----QRRHTLSEVTNQPGII-------- 497

  Fly   482 KALSYEWKIINPYHVRVRRQNVKTGKFSKM--SLQLYQVDAKSYLLDFKSLTND--EVEQG---D 539
                                 ...||...|  :..|..||::   .|..|:.:|  .:|.|   :
Zfish   498 ---------------------TSGGKLFSMGHNPSLGSVDSE---YDMGSMHSDLSLLEDGPSLN 538

  Fly   540 DVIMES-----LTPPPLSVSGVMPLQPT 562
            :|::.:     ||||.:|   ..|..||
Zfish   539 EVVLANTPVTRLTPPFIS---ARPANPT 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 126/254 (50%)
UBA_AID_AMPKalpha 297..360 CDD:270521 11/80 (14%)
AMPKA_C 457..580 CDD:213378 23/118 (19%)
sik2bXP_696325.5 STKc_SIK 21..273 CDD:270973 125/252 (50%)
S_TKc 22..273 CDD:214567 125/251 (50%)
UBA_SIK2 299..343 CDD:270592 7/44 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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