DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AMPKalpha and nuak1b

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_689990.2 Gene:nuak1b / 561496 ZFINID:ZDB-GENE-131120-18 Length:613 Species:Danio rerio


Alignment Length:571 Identity:169/571 - (29%)
Similarity:260/571 - (45%) Gaps:122/571 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 YLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLY 92
            |.|..|||.||:|||:....:.:..:||:|.:.::|||....:..|||||:.:...||||||.:|
Zfish    48 YELLETLGRGTYGKVRKAIERHSGREVAIKSIRKEKIKDEQDMVHIRREIEIMSSLRHPHIISIY 112

  Fly    93 QVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENL 157
            :|......|.::|||.|.|||:|||.:..:|.|.:.|.||:||:|.|.|||::.:||||||.||:
Zfish   113 EVFENKDKIVIVMEYASKGELYDYISERRRLTERETRHFFRQIVSAVHYCHKNGVVHRDLKLENV 177

  Fly   158 LLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCG 222
            |||.|.::|||||||||:....:.|:|.||||.||:||:::|:.|.|||||.|:.||:||.|:.|
Zfish   178 LLDENCNIKIADFGLSNLYHKDKLLQTFCGSPLYASPEIVNGRPYRGPEVDSWALGVLLYTLVYG 242

  Fly   223 TLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWF------- 280
            ::|||......|.|:|.:|.:..|.. :.....|:..||.|:|.:||.:|:|..|.|.       
Zfish   243 SMPFDGGDHKNLIRQISNGEYREPSQ-SSDARGLIRWMLMVNPERRATVEDIANHWWVNWGWKNS 306

  Fly   281 ------QKDLPAYLFPSSIEQDSNV---------IDTYAVAEVCTKFGVKETEVHNSLLSGDPHD 330
                  |:|..:.:....|:..:..         .:.:.:.....|...||.:|..|..:|:  |
Zfish   307 VCDCESQRDNGSPMLARLIDWQNRTEPRPTKAIRSEPFLLVRQRPKKSKKENDVGVSHCNGE--D 369

  Fly   331 QLAIAYHL-IIDNKRFADDAANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATVTVGGGTS 394
            .|.:.... |:..:...:..:..:.||.:  .||:|.....|.......:.              
Zfish   370 SLGLKRPKGILKTRTSEEQRSPSLEEIES--GAGTPEKESGPDGEDGDEEQ-------------- 418

  Fly   395 ASSGTATPVPPVAGGTPSSTIPIRPHPERIAPMRDRQLAMSVQTSGGGAFPEKT----------- 448
                         |.:||.::.|.|....:...:.|:       ||..:.||::           
Zfish   419 -------------GNSPSKSVSILPKKGILKNNQQRE-------SGYYSSPERSESSDLLSGNIT 463

  Fly   449 -ARGGTPIKRAKWHLGI------------------------------RSQSKPNDIMLEVYRAMK 482
             ....:|.|||....||                              ||||:|:.|:.|....:.
Zfish   464 PLAASSPPKRAVGRKGILKRNGKYSTYSGAPPLGVLGEPAPSDSGLSRSQSRPSSIVREESDTIT 528

  Fly   483 ALSY---EWKIINPYHVRVRRQNVKTGKFSKMSLQLYQVDAKSYLLDFKSL 530
            ..|:   ||.   |...   |.|:::...::..||         |.:||.|
Zfish   529 NSSFCSTEWP---PPRT---RPNIRSCLSAENLLQ---------LANFKGL 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 115/251 (46%)
UBA_AID_AMPKalpha 297..360 CDD:270521 11/72 (15%)
AMPKA_C 457..580 CDD:213378 23/107 (21%)
nuak1bXP_689990.2 STKc_NUAK 47..299 CDD:270975 115/251 (46%)
S_TKc 48..299 CDD:214567 115/251 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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