DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AMPKalpha and Brsk1

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001120809.1 Gene:Brsk1 / 499073 RGDID:1563268 Length:778 Species:Rattus norvegicus


Alignment Length:511 Identity:181/511 - (35%)
Similarity:268/511 - (52%) Gaps:104/511 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHII 89
            :|.|.|..|||.|..|.||:|.|.||..||||||:||:|: |..|:.|:.|||..|||..|||::
  Rat    31 VGPYRLEKTLGKGQTGLVKLGVHCITGQKVAVKIVNREKL-SESVLMKVEREIAILKLIEHPHVL 94

  Fly    90 KLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKP 154
            ||:.|......:::::|:|||||||||:||.|:|...:||:||:||:|.:|:||.:.|.||||||
  Rat    95 KLHDVYENKKYLYLVLEHVSGGELFDYLVKKGRLTPKEARKFFRQIVSALDFCHSYSICHRDLKP 159

  Fly   155 ENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYAL 219
            ||||||...:::|||||::::.:....|.||||||:||.||||.|:.|.|...|:|||||||:||
  Rat   160 ENLLLDEKNNIRIADFGMASLQVGDSLLETSCGSPHYACPEVIKGEKYDGRRADMWSCGVILFAL 224

  Fly   220 LCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWF---- 280
            |.|.|||||:::..|..|:|.|:|.:|.::.....:|:..|::|:|.||.::|:|:||.|:    
  Rat   225 LVGALPFDDDNLRQLLEKVKRGVFHMPHFIPPDCQSLLRGMIEVEPEKRLSLEQIQKHPWYLGGK 289

  Fly   281 -----------QKDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAI 334
                       .:.:.....||:.|.|.:|:::.| :..|  |..:| .:|..|.| :..:|..:
  Rat   290 HEPDPCLEPAPGRRVAMRSLPSNGELDPDVLESMA-SLGC--FRDRE-RLHRELRS-EEENQEKM 349

  Fly   335 AYHLIIDNK-RF-------------ADDAANQIN-----------------EINNFFVAGSPPPP 368
            .|:|::|.| |:             .|....:::                 |:.:...|||...|
  Rat   350 IYYLLLDRKERYPSCEDQDLPPRNDVDPPRKRVDSPMLSRHGKRRPERKSMEVLSITDAGSGGSP 414

  Fly   369 PPPPVPQSSMDHQAPLATVTVGGGTSASSGTATPVPPV--------------AGGTPSS---TIP 416
            .|.........|.....:|:......:||..::|..||              .||:|:|   |:|
  Rat   415 VPTRRALEMAQHSQRSRSVSGASTGLSSSPLSSPRSPVFSFSPEPGVGDEARGGGSPTSKTQTLP 479

  Fly   417 IRPHPERIAPMRDRQLAMSVQTSGGGAF---PEKTAR--------------GGTPI 455
            .|      .|            .||||.   |..:||              ||||:
  Rat   480 SR------GP------------RGGGAGEQPPPPSARSTPLPGPPGSPRSSGGTPL 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 129/254 (51%)
UBA_AID_AMPKalpha 297..360 CDD:270521 16/93 (17%)
AMPKA_C 457..580 CDD:213378
Brsk1NP_001120809.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29
STKc_BRSK1_2 32..285 CDD:270983 129/253 (51%)
S_TKc 34..284 CDD:214567 128/250 (51%)
UBA_BRSK 314..367 CDD:270525 16/57 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 362..548 33/174 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 719..778
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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