DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and snrka

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001180256.1 Gene:snrka / 436661 ZFINID:ZDB-GENE-040718-84 Length:804 Species:Danio rerio


Alignment Length:601 Identity:167/601 - (27%)
Similarity:265/601 - (44%) Gaps:142/601 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQ 78
            ||...|......|.|.|..|||.|.|..||:..|..|..|||||::::.|:.:: ..|.:.:|::
Zfish     2 AGIKRGYDGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTV-ATGHLFQEVR 65

  Fly    79 NLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGK-LQEHQARRFFQQIISGVDYC 142
            .:||.:||:|::||:||.|.:.:::|:|...||::||||:||.: |.|..|:::|.||:..:.||
Zfish    66 CMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDMFDYIMKHEEGLNEELAKKYFAQIVHAISYC 130

  Fly   143 HRHMIVHRDLKPENLL-LDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPE 206
            ||..:|||||||||:: .:....||:.|||.||....|:.|.|||||..|:|||::.|..|..|.
Zfish   131 HRLHVVHRDLKPENVVFFEKQGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDEYDAPA 195

  Fly   207 VDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANI 271
            |||||.||||:.|:||..||.:.:.......|....:.:|.:::....:|:.:|||.||.:||::
Zfish   196 VDIWSLGVILFMLVCGQPPFQEANDSETLTMIMDCKYTVPAHVSNACKDLINRMLQRDPKRRASL 260

  Fly   272 EEIKKHEWFQ--KDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLS----GDPHD 330
            |||:.|.|.|  ...||..:.:.:....|:.:                |.|||::.    ||..|
Zfish   261 EEIESHAWLQGVDPSPATKYNTPLVSHKNLSE----------------EEHNSIIQRMVLGDIAD 309

  Fly   331 QLAIAYHLIIDNKRFADDAANQINEIN-NFFV-----------------AGSPPP---------P 368
            :.||...|          ..|:.|.|. .:|:                 :.||..         |
Zfish   310 REAIVEAL----------ETNKYNHITATYFLLAERILREKQEKEVQPRSSSPSNIKAQFRQSWP 364

  Fly   369 PPPPVPQSSMDHQAPLATVTVGGGTS--------------------------ASSGTATPVPPVA 407
            ....:.|...|..|..:....||..|                          ..:.:::|.|   
Zfish   365 TKNDLHQDIEDSLASSSICHAGGPQSPARSAENLLNGHRNKGLLEVSRREEICEASSSSPAP--- 426

  Fly   408 GGTPSSTIPIRP-HPERIAPMRDRQLAMSVQTSGGGAFPEKTARGGTPIKRAKWHLGIRSQSKPN 471
                 :::|..| .|..:||:                 ...:|:..|.:.|.:.......:.:|:
Zfish   427 -----ASLPPNPLKPGVMAPL-----------------ASASAKQRTCLFRVEEDEEEEEEQEPS 469

  Fly   472 DIMLEVYRAMKALSYEWKIINPYHVRVRRQNVKTGKFSKMSLQLYQVDAKSYLLDFKSLTNDEVE 536
            .:..:|....|.||    |.|         .:.:.|.:.:..|:::               :|.|
Zfish   470 PLPTQVVLRRKPLS----ITN---------RLTSRKSAPVLNQIFE---------------EEGE 506

  Fly   537 QGDDVIMESLTPPPLS 552
            ..||..|:...||.||
Zfish   507 SDDDFDMDESLPPKLS 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 108/256 (42%)
UBA_AID_AMPKalpha 297..360 CDD:270521 14/67 (21%)
AMPKA_C 457..580 CDD:213378 19/96 (20%)
snrkaNP_001180256.1 STKc_SNRK 12..269 CDD:270976 108/257 (42%)
S_TKc 16..269 CDD:214567 107/253 (42%)
UBA_SNRK 288..335 CDD:270524 15/72 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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