DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and Smokwl3

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_017450658.1 Gene:Smokwl3 / 368175 RGDID:1565071 Length:493 Species:Rattus norvegicus


Alignment Length:439 Identity:134/439 - (30%)
Similarity:207/439 - (47%) Gaps:85/439 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 YLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGK----IRREIQNLKLFRHPHI 88
            |.:...||.|:||.||:..|:.|:..||        |||:::..|    |..|:..|:...||:|
  Rat    14 YRMAFLLGQGSFGNVKLAWHRKTQALVA--------IKSVEICKKTIRGILSEMTILESLHHPNI 70

  Fly    89 IKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLK 153
            |.|:||:.|.|.|..|::||.||.|.:.|.:.|.|.|.||::.|.|::|.:.|||...|||||:|
  Rat    71 ISLFQVLLTSSQIHFILQYVPGGNLVELIREEGPLPEEQAKKMFGQVVSALRYCHSRGIVHRDIK 135

  Fly   154 PENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYA 218
            |:|:|:|...:||:.|||::.....|..|:|.||:..:.|||::.|:.|.|.:.|:||.||:|:.
  Rat   136 PQNILIDAAGNVKLIDFGVAIKCRPGTLLKTQCGTRGFCAPEIVLGEPYDGKKADVWSLGVLLFF 200

  Fly   219 LLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQK- 282
            |..|..||.......:.:|:.:|.:.||.:|:.|:.||:.|:|.|.|..|.:||||:.|.|.:| 
  Rat   201 LTTGYFPFRGGTTDQIKQKVTTGTYTIPTHLSGQLENLIHQILTVSPELRPSIEEIENHPWIKKC 265

  Fly   283 --DLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNKRF 345
              ::|....|.           |.:.|:....|....::..||                 ..||:
  Rat   266 EVNIPPMTDPD-----------YKIIEMLCGMGYNANDILESL-----------------QQKRY 302

  Fly   346 ADDAANQINEINNFFVAG------SP-------PPPPPPPV---------------PQSSMDHQA 382
             |:.......:.|..:.|      :|       |||||.|.               |...:.|:.
  Rat   303 -DEPMGAYLSLRNHVIEGYEIGSITPAKPGDQCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQ 366

  Fly   383 P-----LATVTVGGGTSASSGTATPVPPVAGGTP-----SSTIPIRPHP 421
            |     ...:|:.|   ........:||:|...|     :||:.:...|
  Rat   367 PSKEQNTVALTLSG---LKMSRCVSMPPIAVYYPKKERSTSTLALHSTP 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 101/255 (40%)
UBA_AID_AMPKalpha 297..360 CDD:270521 9/62 (15%)
AMPKA_C 457..580 CDD:213378
Smokwl3XP_017450658.1 STKc_AMPK-like 13..261 CDD:270905 101/254 (40%)
UBA_MARK_Par1 275..312 CDD:270522 9/65 (14%)
Blue background indicates that the domain is not in the aligned region.

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