DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and CG8485

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_610942.2 Gene:CG8485 / 36579 FlyBaseID:FBgn0033915 Length:860 Species:Drosophila melanogaster


Alignment Length:566 Identity:169/566 - (29%)
Similarity:263/566 - (46%) Gaps:93/566 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 GHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGK--IRREIQNLKLFRHPHI 88
            |.|.|..|||:|.|..||:..|..|..|||||::::.|   ||.|.|  :.:|::.:||.:||::
  Fly    18 GLYDLEETLGSGHFAVVKLARHVFTGAKVAVKVVDKTK---LDDVSKAHLFQEVRCMKLVQHPNV 79

  Fly    89 IKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGK-LQEHQARRFFQQIISGVDYCHRHMIVHRDL 152
            ::||:||.|.:.:::::|...||:|:|||:||.. |.|..||::|:||:..:.|||:..:|||||
  Fly    80 VRLYEVIDTQTKLYLVLELGDGGDLYDYIMKHDSGLSEELARKYFRQILRAITYCHQLHVVHRDL 144

  Fly   153 KPENLLLDHNMH-VKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVIL 216
            ||||::....:. ||:.|||.||..|.|:.|.|.|||..|:|||::.|..|..|.|||||.||||
  Fly   145 KPENVVFFEKLGLVKLTDFGFSNKFLPGQKLETFCGSLAYSAPEILLGDSYDAPAVDIWSLGVIL 209

  Fly   217 YALLCGTLPFD---DEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHE 278
            |.|:||..||:   |....|:....|   :.:|.:::....:|:..||..||.|||.:|||....
  Fly   210 YMLVCGQAPFEKANDSETLTMIMDCK---YTVPSHVSTDCRDLIASMLVRDPKKRATVEEIASSA 271

  Fly   279 WFQK-DLP-------AYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIA 335
            |.:. |.|       .:..|....:.....|...:.:......:...|.....|..:.::.:...
  Fly   272 WL
KPIDEPDSTTSTSEHFLPLVSREQLGEEDHAFIIQKMINGNIASKEEILQALDKNKYNHITAT 336

  Fly   336 YHLIID------------NKRFADDAANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATVT 388
            |.|:.:            .:|..:||:.::.:.:...|    |..|.|...|.            
  Fly   337 YFLLAELRLRRRREELAQKQRLLNDASMKVGDASRKLV----PEKPSPTEAQK------------ 385

  Fly   389 VGGGTSASSGTATPVPPVA--GGTPSSTIPIRPHPERIAPMRDRQLAMSVQTSGGG-----AFPE 446
              ||...|. ..||....|  ||.|..    |.....|....|.:.:.:..|:.|.     :...
  Fly   386 --GGVPISI-NVTPAAQFANDGGKPDK----RSRKCSIVREEDEEESATECTAVGNELKVTSSSR 443

  Fly   447 KTARGGTPIKRAKWHLGIRSQSKP-NDIMLEVYRAMKALSYEWKIIN---PYHVRVRRQNVKTGK 507
            :.|...:|..|:   :..||.|:| |....|            :|.|   |.|.|.:   :....
  Fly   444 REAFSDSPFSRS---IHERSSSEPGNQTKGE------------QIANSGVPSHSRTK---IVVSV 490

  Fly   508 FSKMSLQLYQVDAKSYLLDFKSLTN-DEVEQGDDVIMESLTPPPLS 552
            .:.::.:|.|:: ||..:|..:|:. .|:|.|      .|.|.|.|
  Fly   491 DATLAHKLKQME-KSAKIDEDTLSGLKELEIG------KLKPLPSS 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 111/260 (43%)
UBA_AID_AMPKalpha 297..360 CDD:270521 8/74 (11%)
AMPKA_C 457..580 CDD:213378 25/101 (25%)
CG8485NP_610942.2 STKc_SNRK 16..273 CDD:270976 111/260 (43%)
S_TKc 20..273 CDD:214567 110/258 (43%)
UBA_SNRK 296..338 CDD:270524 3/41 (7%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461626
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24343
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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