DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and Melk

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001382535.1 Gene:Melk / 362510 RGDID:1308974 Length:643 Species:Rattus norvegicus


Alignment Length:381 Identity:143/381 - (37%)
Similarity:206/381 - (54%) Gaps:55/381 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 HYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKL 91
            :|.|..|:|||.|.|||:..|.:|...||:||:::..:.|  .:.:::.||..||..||.||.:|
  Rat    10 YYELYETIGTGGFAKVKLACHILTGEMVAIKIMDKNALGS--DLPRVKTEIDALKNLRHQHICQL 72

  Fly    92 YQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPEN 156
            |.|:.|.:.|||::||..||||||||:...:|.|.:.|..|:||:|.|.|.|.....||||||||
  Rat    73 YHVLETKNKIFMVLEYCPGGELFDYIISQDRLSEEETRVIFRQILSAVAYVHSQGYAHRDLKPEN 137

  Fly   157 LLLDHNMHVKIADFGLSNMMLDGE--FLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYAL 219
            ||.|.|..:|:.||||.......:  .|:|.|||..|||||:|.||.|.|.|.|:||.|::||.|
  Rat   138 LLFDENHKLKLIDFGLCAKPKGNKDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVL 202

  Fly   220 LCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDL 284
            :||.|||||::|..|::||..|.:.:|::|:...:.|:.|||||||.:|.:::.:..|.|..:| 
  Rat   203 MCGFLPFDDDNVMALYKKIMRGKYEVPKWLSPSSILLLQQMLQVDPKRRISMKNLLNHPWILQD- 266

  Fly   285 PAYLFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHN--------SLLSGDPHDQLAIAYHLIID 341
              |..|  ||..|....|: :.|.|    :.|..||:        .|:|...:|.|...|.|::.
  Rat   267 --YSCP--IEWQSKASLTH-LDEDC----ITELSVHHRNSRQTMEDLISSWQYDHLTATYLLLLA 322

  Fly   342 NKRFADDAANQINEINNFFVAGSPPPPPPPPVPQSSMDHQAPLATVTVGGGTSASS 397
            .|                 ..|.|                |.|..::..|||::::
  Rat   323 KK-----------------ARGKP----------------ARLQLLSFSGGTTSTT 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 116/254 (46%)
UBA_AID_AMPKalpha 297..360 CDD:270521 14/70 (20%)
AMPKA_C 457..580 CDD:213378
MelkNP_001382535.1 STKc_MELK 7..263 CDD:270980 116/254 (46%)
UBA_MELK 281..332 CDD:270526 15/88 (17%)
MELK_C 547..641 CDD:213383
Blue background indicates that the domain is not in the aligned region.

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