DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and Sik2

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001414257.1 Gene:Sik2 / 315649 RGDID:1559698 Length:932 Species:Rattus norvegicus


Alignment Length:435 Identity:160/435 - (36%)
Similarity:241/435 - (55%) Gaps:63/435 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPH 87
            |::|.|.:..|||.|.|..||:|.|:||:.:||:||:::.::.::: :.||.||:|.:|:..|||
  Rat    15 VRVGFYDIEGTLGKGNFAVVKLGRHRITKTEVAIKIIDKSQLDAVN-LEKIYREVQIMKMLDHPH 78

  Fly    88 IIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDL 152
            |||||||:.|.|.::::.||...||:|||:..||:|.|.:|||.|.||:|.|||||...:|||||
  Rat    79 IIKLYQVMETKSMLYLVTEYAKNGEIFDYLANHGRLNESEARRKFWQILSAVDYCHSRKVVHRDL 143

  Fly   153 KPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILY 217
            |.||||||::|::||||||..|....||.|.|.||||.||||||..|:.|.||::||||.||:||
  Rat   144 KAENLLLDNSMNIKIADFGFGNFFKTGELLATWCGSPPYAAPEVFEGQQYEGPQLDIWSMGVVLY 208

  Fly   218 ALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQK 282
            .|:||.||||...:|.|.:::..|.|.||.::::...:|:.:||.:||.||.:|.:||:|:|...
  Rat   209 VLVCGALPFDGPTLPILRQRVLEGRFRIPYFMSEDCEHLIRRMLVLDPSKRLSIAQIKEHKWMLI 273

  Fly   283 DLPA---YLFPSSIEQDSNVID-TYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNK 343
            ::|.   .|:|...|.:.::.: ...|..:....|:.:.:...| |....::..|..|.|:::..
  Rat   274 EVPVQRPILYPQEQENEPSIGEFNEQVLRLMHSLGIDQQKTIES-LQNKSYNHFAAIYFLLVERL 337

  Fly   344 RFADDAANQINEINNFFVAGSPPPPPPPPVPQ---------SSMDHQAPLATVTVGGGTSASSGT 399
            :         :..::|            ||.|         |::..|......|||         
  Rat   338 K---------SHRSSF------------PVEQRLDGRQRRPSTIAEQTVAKAQTVG--------- 372

  Fly   400 ATPVPPVAGGTPSSTIPIRPHPERIAPMRDRQLAMSVQTSGGGAF 444
                           :|:..||..:..||...|.   |.|...||
  Rat   373 ---------------LPVTLHPPNLRLMRSTLLP---QASNVEAF 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 128/254 (50%)
UBA_AID_AMPKalpha 297..360 CDD:270521 7/63 (11%)
AMPKA_C 457..580 CDD:213378
Sik2NP_001414257.1 None
Blue background indicates that the domain is not in the aligned region.

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