DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AMPKalpha and Tssk4

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001400875.1 Gene:Tssk4 / 290229 RGDID:1560814 Length:339 Species:Rattus norvegicus


Alignment Length:320 Identity:112/320 - (35%)
Similarity:171/320 - (53%) Gaps:39/320 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 AEAVAAGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGK- 72
            :|..:|..|....:.:.| |.:|..:|.|::|.|....:...:|.|||||::::| .|.|.:.| 
  Rat     7 SETASATPAYRSVMEEYG-YEVGKVIGHGSYGTVYEAYYTKQKVMVAVKIISKKK-ASEDYLNKF 69

  Fly    73 IRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIIS 137
            :.||||.:|:.||.::|..||.|.|.|.:::|:|...||::.::|.::|...|..|.::|.|:..
  Rat    70 LPREIQVMKVLRHKYLINFYQAIETTSRVYIILELAQGGDVLEWIQRYGACSETLAGKWFSQMAL 134

  Fly   138 GVDYCHRHMIVH----------RDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTS------- 185
            |:.|.|...|||          ||||.||||||...:|||:|||.:.|:...:.:|:|       
  Rat   135 GIAYLHSKGIVHRLTPSLSAAGRDLKLENLLLDKRENVKISDFGFAKMVPSSQPVRSSPSYRQMN 199

  Fly   186 ---------CGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSG 241
                     |||..||.||::.|..|.....|.||.|||||.|:...|||||.::..|.|:.:..
  Rat   200 CLSHLSQTYCGSFAYACPEILLGLPYNPFLSDTWSMGVILYTLVVARLPFDDTNLKKLLRETQKE 264

  Fly   242 I-FPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDLPAYLFPSSIEQDSNVI 300
            : ||....::::..||:.|:|: ...|||.|.::.:..|..|      |.|  ||.||.|
  Rat   265 VTFPANLTISQECKNLILQLLR-PATKRATILDVLRDPWMLK------FQS--EQPSNEI 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 100/282 (35%)
UBA_AID_AMPKalpha 297..360 CDD:270521 3/4 (75%)
AMPKA_C 457..580 CDD:213378
Tssk4NP_001400875.1 STKc_TSSK4-like 24..302 CDD:271064 100/280 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.