DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and Smok2a

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_038769.1 Gene:Smok2a / 27263 MGIID:1351487 Length:504 Species:Mus musculus


Alignment Length:488 Identity:130/488 - (26%)
Similarity:226/488 - (46%) Gaps:63/488 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 YLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLY 92
            |.:..|:|.|...|||:..|::|...||||::.:::.....::.    |.:.|.:..||:||.|.
Mouse    28 YEMLGTIGHGGSTKVKLARHRLTGTHVAVKMIPKREYWCKPLMS----EAELLMMADHPNIISLL 88

  Fly    93 QVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENL 157
            |||.|...:::|||...|..|:.:|...|.|||.:||..|:|::|.::|||...||||||||:|:
Mouse    89 QVIETKKKVYLIMELCEGKSLYQHIRNAGYLQEDEARALFKQLLSAINYCHNQGIVHRDLKPDNI 153

  Fly   158 LLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCG 222
            :::.:..|||.||||...:..|:.|...||:..::||||:..:.|.||::|:|:.||:||.::.|
Mouse   154 MVEKDGRVKIIDFGLGIQVKPGQKLNLFCGTYPFSAPEVLLSRPYDGPKIDVWTLGVVLYFMVTG 218

  Fly   223 TLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDLPAY 287
            .:|||...:..|.::|.:|.:.:|..|:.::.:|:..::..:|..|..:.|:..|.|..|.  :.
Mouse   219 KIPFDAASIEKLRKQIVAGKYSVPCRLSVKLHHLITLLMTDNPELRPTVAEVMMHPWVTKG--SG 281

  Fly   288 LFPSSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNKRFADDAANQ 352
            :||...|:...:....|:.:.....|.:..::.:||.....::.:| :|.|:  .|:...:....
Mouse   282 VFPDPCEEQIPLKPDPAIVKAMGHIGFQAQDIEDSLRQRKFNETMA-SYCLL--KKQILKECDRP 343

  Fly   353 INEINNFFVAGSPPPPPPPPVPQ------------------SSMDHQAPLATVTVGGGTSASSGT 399
            |.        ..|..|...|.|.                  :|:...|.......|..||.....
Mouse   344 IR--------AQPMNPSVTPFPSLVDTPTFHLGLRRRETEPTSLRLSANRQMSVCGRSTSKKRDR 400

  Fly   400 ATPVPPVAGGTPSSTIPIRPHPE------RIAPMRDRQLAMSVQTSGGGAFPEKTARGGT----- 453
            :...|    |..|..|.|.|..:      |..|..:....:....|.     :::..|.|     
Mouse   401 SFSWP----GVLSRPINITPTMDQTHTCTRSVPCINSNFCIIHPNSS-----DESTEGHTSASAE 456

  Fly   454 --PIKRAKWHLGIRSQSKPNDIMLEVYRAMKAL 484
              |::...|..||:..:.      ::..||:.|
Mouse   457 DKPVRSRGWPRGIKGWTS------KIGNAMRKL 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 89/251 (35%)
UBA_AID_AMPKalpha 297..360 CDD:270521 9/62 (15%)
AMPKA_C 457..580 CDD:213378 6/28 (21%)
Smok2aNP_038769.1 STKc_AMPK-like 27..275 CDD:270905 89/250 (36%)
S_TKc 28..276 CDD:214567 89/251 (35%)
UBA_MARK_Par1 295..334 CDD:270522 7/41 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 376..403 5/26 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 443..469 4/30 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24343
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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