DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and kin1

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_596106.1 Gene:kin1 / 2540792 PomBaseID:SPBC4F6.06 Length:891 Species:Schizosaccharomyces pombe


Alignment Length:650 Identity:187/650 - (28%)
Similarity:284/650 - (43%) Gaps:156/650 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SANGQPLVK---IGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNR---------------- 61
            ||:.:|..:   ||:|:||.|:|.|:.||||:..|..|..:.|:||:.|                
pombe   110 SADEKPRERRKVIGNYVLGKTIGAGSMGKVKVAHHLKTGEQFAIKIVTRLHPDITKAKAAASAEA 174

  Fly    62 ------QKIKSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKH 120
                  :|.|.:..|    ||.....|.|||:|.:...|..|.|..:|:.|:|.||::.|||:.|
pombe   175 TKAAQSEKNKEIRTV----REAALSTLLRHPYICEARDVYITNSHYYMVFEFVDGGQMLDYIISH 235

  Fly   121 GKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTS 185
            |||:|.|||:|.:||.|.:.|.|::.:||||||.||:|:.....:||.||||||:......|||.
pombe   236 GKLKEKQARKFVRQIGSALSYLHQNSVVHRDLKIENILISKTGDIKIIDFGLSNLYRRQSRLRTF 300

  Fly   186 CGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLN 250
            |||..:||||:::.:.|.|||||:||.|::||.|:||.:||||:::..|..|||.|....|.||:
pombe   301 CGSLYFAAPELLNAQPYIGPEVDVWSFGIVLYVLVCGKVPFDDQNMSALHAKIKKGTVEYPSYLS 365

  Fly   251 KQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDL---PAYLFPSS-------------------- 292
            .....|:.:||..||||||.:||:..|.|..::.   ||...|..                    
pombe   366 SDCKGLLSRMLVTDPLKRATLEEVLNHPWMIRNYEGPPASFAPERSPITLPLDPEIIREMNGFDF 430

  Fly   293 ------IEQDSNVIDTYAVAEVCT-----------------KFGVKET--EVHNSLL-----SGD 327
                  :.:.:.||.:.|...:..                 :|.::..  ::.|.:|     :.|
pombe   431 GPPEKIVRELTKVISSEAYQSLAKTGFYSGPNSADKKKSFFEFRIRHAAHDIENPILPSLSMNTD 495

  Fly   328 PHDQL--AIAYHLIIDNKRFADDAANQINEINNFFVAGSPPP-----------PPPPPVPQSSMD 379
            .:|..  .|:.:.::..:|..:...|. |.|....|:..|..           ||.|.|.....|
pombe   496 IYDAFHPLISIYYLVSERRVYEKGGNW-NRIAKTPVSSVPSSPVQPTSYNRTLPPMPEVVAYKGD 559

  Fly   380 HQAPLATVTVGGGTSASSGTATPVPPVAGGTPSSTIPIRPHPERI---APMRDRQLAMSVQTSGG 441
            .::|    .|...||.:.....|.......:||:|..|:.:|..|   ...|.:|...|..|...
pombe   560 EESP----RVSRNTSLARRKPLPDTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQI 620

  Fly   442 GAFPEKTARGGTPIKRAKWHLGIRSQSKPNDIMLEVYRAMKALSYEWKIINPYHVRVRRQNVKTG 506
            .| |.:|:: ..|..|.|      ...||            .:||:.|::....:. |..:|:.|
pombe   621 SA-PLETSQ-SPPTPRTK------PSHKP------------PVSYKNKLVTQSAIG-RSTSVREG 664

  Fly   507 KFSKMSLQLYQVDAKSYLLDFKSLTNDEVEQGDDVIMESLTP--------PPLSVSGVMPLQPTG 563
            :::.:|.|:                       |.:.|:|..|        || ||.....|.|.|
pombe   665 RYAGISSQM-----------------------DSLNMDSTGPSASNMANAPP-SVRNNRVLNPRG 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 118/276 (43%)
UBA_AID_AMPKalpha 297..360 CDD:270521 13/88 (15%)
AMPKA_C 457..580 CDD:213378 22/114 (19%)
kin1NP_596106.1 STKc_Kin1_2 123..395 CDD:270979 117/275 (43%)
S_TKc 125..395 CDD:214567 116/273 (42%)
MARK_C_like 753..889 CDD:213377
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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