DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and nimk-1

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_496679.3 Gene:nimk-1 / 186015 WormBaseID:WBGene00009867 Length:503 Species:Caenorhabditis elegans


Alignment Length:371 Identity:138/371 - (37%)
Similarity:209/371 - (56%) Gaps:29/371 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 NGQPLV--------KIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGK-- 72
            |..|:|        :||.|.||..||.|.|.|||:|.||:|:.||||||:::.|   :|...:  
 Worm   119 NNDPVVHKEVALGRRIGFYRLGKELGAGNFSKVKLGVHQLTKEKVAVKIMDKAK---MDAKAQKL 180

  Fly    73 IRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIIS 137
            :.||||.::...||:|:||::|:.|.:.:.:::||.|||||:.|:.:.|||.|..|:..|.||:|
 Worm   181 LSREIQAMEEMNHPNIVKLFEVVETLTRVHLVIEYASGGELYTYVHERGKLTEGDAKPLFAQIVS 245

  Fly   138 GVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLY 202
            .|.:.|...|||||:|.||::......||:.|||.|.::...:.|||.||||.|||||:.....|
 Worm   246 AVSHMHSRNIVHRDIKAENVMFSSPNTVKLVDFGFSCLVDREQMLRTFCGSPPYAAPELFQDTSY 310

  Fly   203 AGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLK 267
            ||..||:|:.||:|:.:|.|..||..|.||.:...|.:|.:.||:|::.....|:..||:.|..:
 Worm   311 AGELVDVWALGVLLFFMLIGVTPFKAETVPDMKVLITAGKYQIPDYVSLLATELIKSMLKTDTGQ 375

  Fly   268 RANIEEIKKHEW-----FQKDLPAYLFPSSI--EQDSNVIDTYAVAEVCTKFG-VKETEVHNSLL 324
            ||:|:.:|||.|     |.|...:....:.|  |::...||. .|.::...:| |||..|..:|.
 Worm   376 RADIDSVKKHFWMRDCRFTKSYLSIKATAKIDNEEEKKAIDD-KVWKILNNYGIVKEMIVEENLD 439

  Fly   325 SGDPHDQLAIAYHLI-----IDNKRFADDAANQINEINNFFVAGSP 365
            .| |.|.:...|.::     .:..|.|.: .::....::.|..|||
 Worm   440 KG-PRDAVVGTYRIVQFQVQSEITRLAKE-KDEPQPSSSSFTNGSP 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 112/261 (43%)
UBA_AID_AMPKalpha 297..360 CDD:270521 15/68 (22%)
AMPKA_C 457..580 CDD:213378
nimk-1NP_496679.3 STKc_NIM1 134..388 CDD:270977 111/256 (43%)
Blue background indicates that the domain is not in the aligned region.

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